Lsuf029793.3
Basic Information
- Insect
- Lampropteryx suffumata
- Gene Symbol
- Rfx2
- Assembly
- GCA_948098915.1
- Location
- OX402547.1:18438695-18463363[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.15 1.3e+03 1.0 0.0 3 17 222 236 221 242 0.88 2 4 0.46 4e+03 -0.6 0.0 5 17 281 293 277 297 0.85 3 4 0.51 4.4e+03 -0.7 0.0 5 17 338 350 334 354 0.86 4 4 3.3e-36 2.9e-32 112.0 0.1 5 78 395 468 391 469 0.97
Sequence Information
- Coding Sequence
- ATGTCTGAGATGGGGTTTGAAAATGTGTTCTATTTGGAGAACTTTGAGTGCGCTGGTGACGAGGTGCTAGTGGAGTCTTCGCCGCCAGCTTCACCAGACATGGCGGCGCGACTCGCGGCTCCCGCGCAGAGCAACGGCACGGGTAGCGCGTCGCCGAGTGCTGTCCGTGACCTCATTGTGATCCCCGAGCTGCCCGACTCCTTGCAACTGCAGCATGCCATACAGCAGGTGTCCAGTACAGTAGTGGAAGTGAACGGCGTCAATGGAGTCAACGGTGACAGTTCAGGGCAATCGAGCCCTAACGCAGAGGCTCAGCATGCTTTCATCACTGTCGCCATGACGGGGGCATGGCGAGACCAGCACACAATGAAAGAAGAACCCAGCGACTACGAAAGTGAAGGAGGGAATGGAGTTAACTACCATGTGCAGTATGTCACTGAGCCGCAGGAAATATACGCGCAAGGACATCAGGCAATGGAAACGCTCCGTTCGTATCCGGTGTATGGCGTGGCTACGGTCGGTAACGCGGTCGGCGACGGGGACGGGGCGTGGGGCGGGGCTAACTCCGCAGATTACGCCGCCTATGGAGTCGTGGTGGCGAGTGGGGGCGAGGAGGGCTCGGCGCCCGCGTCCCCCGCCAGCGCACCGGCGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACCACTACGAGACCGCGGAAGGTAACCGTGACACTACACACACATACACACCCCGTGCAGTGGCTGCTCGACCACTACGAGACCGCGGAAGTGGCTGCTCGACCACTACGAGACCGCGGAAGGTAACCGTGACACTACACACTCATACACACCCCGTGCAGTGGCTGCTCGACCACTACGAGACCGCGGAAGGTAACCGTGACACTACACACTCATACACACCCCGTGCAGTGGCTGCTCGACCACTACGAGACCGCGGAAGTGGCTGCTCGACCACTACGAGACCGCGGAAGGTAACCGTGACACTACACACACATAGACACCCCGTGCAGTGGCTGCTCGACCACTACGAGACCGCGGAAGGTAACCGTGACACTACACACACATACACACCCCGTGCAGTGGCTGCTCGACCACTACGAGACCGCGGAAGTGGCTGCTCGACCACTACGAGACCGCGGAAGGTAACCGTGACACTACACACTCATACACACCCCGTGCAGTGGCTGCTCGACCACTACGAGACCGCGGAAGGCGTTTCCCTTCCGCGTTCAACACTTTACGCCCACTACCTACGTCACTGCTCCATCCATCACCTGGAGCCAGTGAACGCGGCTTCGTTTGGAAAACTCATACGCTCAGTGTTTGTGGGGCTTCGGACCAGACGCCTGGGAACGAGAGGCAACTCCAAGTATCATTACTACGGTATCCGAGCTAAGCCGAACTCGGAGCAACATACCCCGGACGCGAATGACAGCGCTGATGATAACGCGGAGCTGAATGAGAAACAGGAGGATCGCGAGAGACCTCGCTCCCGTTCGGAAGGAGCAGGCTCTCCCCTGGGGGCCGCCTCTGTCGCTCACAGACAGTATCTCGGTTCGGTGACCGCGCCGACGCCGCCTGCACTCGACGTCGAGCTAAGTGACGACATACCGCCAGGGGCCTTGCAGCTACTGCATAGACACCATCGTGAGCATGGCGCTATGTTCCTTGAAGCGGTGGCGGCGTTGGACACGGGCGCCGTGGAGGCCGCGCGTCGCTCCTTCTGGCGACGTGCCAACGACGACGACGTACTCTGTCGTAGGACTCTGGCGCTGCTCTGCTCCAGGAAGGACGTATGTCGCTGGCTGCGCACGGCAGATACCCAGCTGTACCAGCGAGCTGTGGACATGTTGCTGCCCGACGTACTGCGTCCTATCCCGCCGCAACTTACACAGGCTATCCGCAACTTCGCGAAGAGCGTCGAGTGCGCGGTGTCGGCCGGGTCGGGCGGCGCGCCGCTGGCGGGCGTGCGGGCCCAAGCGCGGGCCGCCGCCGCACTCGCGGGCGCATTGCGTCGCTACACCTCACTCAACCACCTGGCGCAGGCGGCGCGGGCTGTGCTCACCAACCATCACCAGATACATCAGGTATGTGTACGTGCGGGCCCAAGCGCGGGCCGCCGCCGCACTCGCGGGCGCATTGCGTCGCTACACCTCACTCAACCACCTGGCGCAGGCGGCGCGGGCTGTGCTCACCAACCATCACCAGATACATCAGGTATGTGTACGTGCGGGCCCAAGCGCGGGCCGCCGCCGCACTCGCGGGCGCATTGCGTCGCTACACCTCACTCAACCACCTGGCGCAGGCGGCGCGGGCTGTGCTCACCAACCATCACCAGATACATCAGGTATGTGTACGTGCGGGCCCAAGCGCGGGCCGCCGCCGCACTCGCGGGCGCATTGCGTCGCTACACCTCACTCAACCACCTGGCGCAGGCGGCGCGGGCTGTGCTCACCAACCATCACCAGATACATCAGATGGTGTCGGACCTGAACCGCGTGGACTTCCGCGTGGTGCGCGAGCAGGCCGCCTGGGCGTGCGCCTGTCCCTCGGCCGCCGTGGCACTCAAACTGGAAGCTGATTTCAAGGCTACCCTCGGACGCGGCGCGACACTGGAGCAGTGGGCGGCGTGGCTGGAGCGGTGCGTGAGCTCGGCACTGGCCGCGCACGCCGGCCGGCCCGACTACGTGCCGCGCGCCCGCCGGCTGCTGCTCGACTGGTCCTTCTACTCCTCGCTCGTCATCAGAGAACTTACGCTCAGGTACCCACTCTACCCACCGAGCTTTGCTAACTTTAGAGCTGGATGGTCTTATTATTCGGGGAAACGGGCTTAG
- Protein Sequence
- MSEMGFENVFYLENFECAGDEVLVESSPPASPDMAARLAAPAQSNGTGSASPSAVRDLIVIPELPDSLQLQHAIQQVSSTVVEVNGVNGVNGDSSGQSSPNAEAQHAFITVAMTGAWRDQHTMKEEPSDYESEGGNGVNYHVQYVTEPQEIYAQGHQAMETLRSYPVYGVATVGNAVGDGDGAWGGANSADYAAYGVVVASGGEEGSAPASPASAPARMPPATVQWLLDHYETAEGNRDTTHTYTPRAVAARPLRDRGSGCSTTTRPRKVTVTLHTHTHPVQWLLDHYETAEGNRDTTHSYTPRAVAARPLRDRGSGCSTTTRPRKVTVTLHTHRHPVQWLLDHYETAEGNRDTTHTYTPRAVAARPLRDRGSGCSTTTRPRKVTVTLHTHTHPVQWLLDHYETAEGVSLPRSTLYAHYLRHCSIHHLEPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKPNSEQHTPDANDSADDNAELNEKQEDRERPRSRSEGAGSPLGAASVAHRQYLGSVTAPTPPALDVELSDDIPPGALQLLHRHHREHGAMFLEAVAALDTGAVEAARRSFWRRANDDDVLCRRTLALLCSRKDVCRWLRTADTQLYQRAVDMLLPDVLRPIPPQLTQAIRNFAKSVECAVSAGSGGAPLAGVRAQARAAAALAGALRRYTSLNHLAQAARAVLTNHHQIHQVCVRAGPSAGRRRTRGRIASLHLTQPPGAGGAGCAHQPSPDTSGMCTCGPKRGPPPHSRAHCVATPHSTTWRRRRGLCSPTITRYIRYVYVRAQARAAAALAGALRRYTSLNHLAQAARAVLTNHHQIHQMVSDLNRVDFRVVREQAAWACACPSAAVALKLEADFKATLGRGATLEQWAAWLERCVSSALAAHAGRPDYVPRARRLLLDWSFYSSLVIRELTLRYPLYPPSFANFRAGWSYYSGKRA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -