Lyun004935.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010000835.1:2794141-2808091[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0061 59 4.0 0.0 26 44 173 191 157 198 0.83 2 9 0.061 6e+02 0.8 0.1 26 46 201 221 194 225 0.89 3 9 0.047 4.5e+02 1.2 0.3 26 51 353 378 344 381 0.85 4 9 0.00047 4.6 7.6 0.0 23 46 406 429 401 435 0.86 5 9 0.014 1.4e+02 2.8 0.0 21 48 432 458 427 461 0.87 6 9 0.0045 44 4.4 0.1 23 47 490 514 483 521 0.82 7 9 0.051 4.9e+02 1.1 0.0 21 46 516 541 507 549 0.78 8 9 0.0008 7.8 6.8 0.1 21 49 544 572 536 575 0.85 9 9 0.00015 1.5 9.2 0.0 21 44 572 595 568 599 0.90
Sequence Information
- Coding Sequence
- ATGGAGGATAATTTGAAGGTAAACTATTCTGCTTTTATTTGTCGCGCTTGCCTTACGGAGGACGGCGATTTTCAATCGGTATTTGAGTACGAAGAAAATTGCGGATTAACCATACAATTATCTGAAATGATAATGACTTATACTTCTCTTCAGATTATGTTAGGGGATGGATTACCCGAACAAATTTGTTCGACTTGCGCAAAAACGGTAGTGCAAATGTATCTATTTAAACAGCAGTGTGAAGAATCAGACTCTACGTTACGAAACGAAATAAACAGGCATGCCAATAAGGTATACATTACAGAAGAGCATCAGTTAACGGCAGAAGCGTTGAACATAGATCCCTATTTAATTGACGTCGTTGTGAAACCAGAAGTGGGTACAGAAAATGACGAGATCATTTTAAACAACGATATAAGTACCCTTAATGTACAAGACAACCACGAAACACACATTGTTGCTTCCAAAGATAGATCGGGCGAAGAAGAATCAGACGTAAAGGTAGAcgaaaaatttatttgtgaCATTTGCTATGATGTATTTAGTCGAGTGAGCCACTTAAACAAACACAAGAAGGTACACTCAATGTTAAACGAATATGTTTGTAATATGTGTAACAACAGTTTTGCACAAAAGGATTTGTTGCTTCGTCATCTGGAGACACACGAGATTAAATTAGAAGAGCAGTTGTCACAATTTGAAATGATTCTACGTGAAGAATCCGTTTCGCCCTTCGAATGTGTTGCTACTTCAAAGATAGAAGAGTCATTTGACAAAAATGACTCAGACAAAAGTGATTTAGTGTTAAAACACTTTTGCGGATTATGCAACAAAggctttattaatttagagaGTGTACTTCAACATCAAGGAATTCATAAAGCTAAATCGGAAAGAGCTTTAAACAAGGGTAttcttataaaaaaagtaataaacgaaaataataTTGGTAATGTTAACCTAAAATGTGTGCCTTGTAATTTGGAATTTGTACGAAAAAGAGACTTTACCGCACATTTGTCGATACACAAATCGAGACGGAAGATGGGTGAATTGATATGCCACATGTGCAAAAGAGTGTTTTGTAAGACGTCCCATCTTATGAGGCATATGAAAATACATGACACTGTTAAGGCGAATGTGTGCACATTATGCAATAAGGGTTTTACAAGGAAGGAACAACTTGTTCATCACATGAATGCGCATTCTGGAATAAAACCGCACACTTGTAATATTTGCAACAAAGGCTTTAACCAAATTTCTAACTTGAAGGATCATATGCGAACACATAATGGAGAGAAACCATTCTTATGTTCAAGTTGCGGGAAAGGTTTTAATCAGCTTGGTAATCTACGTCAACATACTATAAGACATAGTGGAGTTAAGGCACATTTATGTAACACTTGCGGAAGCGGATTTGCTAGTAAAGGAGAGCTGTCAGCGCATTTACGAAAACATACAGGTGCGAGACCGTTTGTGTGTCCAATTTGCAATCACGGGTTTACAACATCTAGTTCCTTAACAAAGCATAAGCGTATTCATTCGGGTGAAAAACCTTACGAATgtgaaatgtgtaaaatgaaattttctcgTTCGGGAATTTTAGCAAGGCATAAACGAACACACACCGGTGAAAAACCATACGTCTGTACATATTGCACAAAGGCATTTTCTCAATCGAACGATCTTAATTCTCATTTAAGAATACACACAGGAGAGAAACCATTTATTTGCGACATTTGTGGACAAGCATTTAGACAAAGTACAGCACTAAAAACTCATAAAAAGATACATATAGATCGTTCTGTTGATGAATCACGTTTGTTGGTATAG
- Protein Sequence
- MEDNLKVNYSAFICRACLTEDGDFQSVFEYEENCGLTIQLSEMIMTYTSLQIMLGDGLPEQICSTCAKTVVQMYLFKQQCEESDSTLRNEINRHANKVYITEEHQLTAEALNIDPYLIDVVVKPEVGTENDEIILNNDISTLNVQDNHETHIVASKDRSGEEESDVKVDEKFICDICYDVFSRVSHLNKHKKVHSMLNEYVCNMCNNSFAQKDLLLRHLETHEIKLEEQLSQFEMILREESVSPFECVATSKIEESFDKNDSDKSDLVLKHFCGLCNKGFINLESVLQHQGIHKAKSERALNKGILIKKVINENNIGNVNLKCVPCNLEFVRKRDFTAHLSIHKSRRKMGELICHMCKRVFCKTSHLMRHMKIHDTVKANVCTLCNKGFTRKEQLVHHMNAHSGIKPHTCNICNKGFNQISNLKDHMRTHNGEKPFLCSSCGKGFNQLGNLRQHTIRHSGVKAHLCNTCGSGFASKGELSAHLRKHTGARPFVCPICNHGFTTSSSLTKHKRIHSGEKPYECEMCKMKFSRSGILARHKRTHTGEKPYVCTYCTKAFSQSNDLNSHLRIHTGEKPFICDICGQAFRQSTALKTHKKIHIDRSVDESRLLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00854386;
- 90% Identity
- iTF_00854386;
- 80% Identity
- iTF_00854386;