Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010000047.1:1729658-1731252[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.96 14 6.5 2.1 2 21 64 83 63 84 0.93

2 14 1.8 26 5.6 0.2 1 21 138 158 138 159 0.91

3 14 0.00045 0.0064 17.0 1.4 1 23 160 182 160 182 0.99

4 14 0.0031 0.044 14.4 1.2 2 23 188 209 187 209 0.96

5 14 2.1e-05 0.0003 21.2 3.6 1 23 214 236 214 236 0.99

6 14 0.00014 0.002 18.6 1.4 2 23 242 263 241 263 0.97

7 14 9.3e-05 0.0013 19.2 1.1 2 23 269 290 268 290 0.97

8 14 0.00027 0.0038 17.7 0.9 2 23 296 317 295 317 0.97

9 14 0.00063 0.0089 16.5 1.9 1 23 322 344 322 344 0.99

10 14 0.00033 0.0047 17.4 1.5 2 23 350 371 349 371 0.97

11 14 0.00017 0.0024 18.4 1.0 2 23 377 398 376 398 0.96

12 14 0.0001 0.0014 19.0 3.4 2 23 404 425 403 425 0.97

13 14 0.14 2 9.1 3.1 2 23 431 452 430 452 0.97

14 14 0.00014 0.002 18.6 0.8 2 23 485 506 484 506 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.96	14	6.5	2.1	2	21	64	83	63	84	0.93
2	14	1.8	26	5.6	0.2	1	21	138	158	138	159	0.91
3	14	0.00045	0.0064	17.0	1.4	1	23	160	182	160	182	0.99
4	14	0.0031	0.044	14.4	1.2	2	23	188	209	187	209	0.96
5	14	2.1e-05	0.0003	21.2	3.6	1	23	214	236	214	236	0.99
6	14	0.00014	0.002	18.6	1.4	2	23	242	263	241	263	0.97
7	14	9.3e-05	0.0013	19.2	1.1	2	23	269	290	268	290	0.97
8	14	0.00027	0.0038	17.7	0.9	2	23	296	317	295	317	0.97
9	14	0.00063	0.0089	16.5	1.9	1	23	322	344	322	344	0.99
10	14	0.00033	0.0047	17.4	1.5	2	23	350	371	349	371	0.97
11	14	0.00017	0.0024	18.4	1.0	2	23	377	398	376	398	0.96
12	14	0.0001	0.0014	19.0	3.4	2	23	404	425	403	425	0.97
13	14	0.14	2	9.1	3.1	2	23	431	452	430	452	0.97
14	14	0.00014	0.002	18.6	0.8	2	23	485	506	484	506	0.97

Sequence Information

Coding Sequence: ATGGATGTCGATTGCAATGAAAGTTGTCCAGTAAAATCTGACGAGACTCTAactgaaacattttcttttggtgAAGAATGCGGAGattatgggaataaaaaattgaaattggagCCAGTAGGTAtgaaagaatcttttaaattcaaGGAAGAAGATAACCCTACAGAGCAAATGAATATATCTGCTGATCCTTGTGTGGATTGTAATTGTAGAACAACGGAAAGGGATTGTCTAATAAAACATCTGAAAAGTACTAAAAACATTCAACTtttgtgtaaagaatgtaattttaaaactctATTGCAATGTTCTATGAATGAACATCATGGATTAATTAGTAACTGTAATTTTGAGACACCTCAAATTATCTCTTTAACACAACAATTGAAAACTGATGAAAGTGGTGATTACTATATTTGTAATCAGTGTGGTTTtaaaacacaatggaaaaatgaactaaatgtacatataaataagtataaatgtaaggaatgtgattttaaaacggtGTGGAAGTCGAATCTTAAcaatcatatgaaaattcacacagatgataaattgaagtgtaaagaatgtgactataaaacacttaggaaatataatttagacgaacatatgagaattcatacaggtgatgaatttaaatgtaaagaatgtaactataaaacacctaggaaatatcatttagaagaacatatgagaattcatacgggtgatgaattgaagtgtaaagaatgtaactacAAAACTTCTAGAAAACAAGATCTTATcacacatatcaaaattcacacaggtcataaattgaaatgtaaagaatgtgaataCACAACTGCTAGGAAACAGGATCTTAacacacatatgaaaattcatacaggtgatgaattaaagtgtaaagaatgtgactacaaaactcctaGGAAACAATATCTAATtttacatatgaaaattcacacaggtgataaaTTTAAGTGTACacaatgtgactacaaaactcctaagaaatatgtattaaaagaacatatgagaattcatacaggtgatgaattgaagtgtacggaatgtgactacaaaactcctaGAAAACAAGATTTTAacacacatatgaaaattcatacaagtgatgaattaaattgtaaagaatgtaattacaaaactcCTAGGAAACAAGATCTTAtcaaacatatgaaaattcacacaggtgataaattgaaatgtaaagaatgtgactaccaAACTGCTAGGAAACATGATCTTAACACGCATATGAaaactcatacaggtgatgaaatgaagtgtaaagaatgtgattataaaactgtatggagATGTAATCTTAACAAGCATATAAAACTTCACACAGATGATAAATTGAAGTGTAAacaatgtgactacaaaacttctaagaaatatatattaaaagagTATACgagaattcatacagatgatgaatTAAAGTGTgctgaatgtgactataaaacatcTAGGAAACAATCTCTTATtacacatatgaaaattcacacaagTGATAAATTGAATTGTTAG
Protein Sequence: MDVDCNESCPVKSDETLTETFSFGEECGDYGNKKLKLEPVGMKESFKFKEEDNPTEQMNISADPCVDCNCRTTERDCLIKHLKSTKNIQLLCKECNFKTLLQCSMNEHHGLISNCNFETPQIISLTQQLKTDESGDYYICNQCGFKTQWKNELNVHINKYKCKECDFKTVWKSNLNNHMKIHTDDKLKCKECDYKTLRKYNLDEHMRIHTGDEFKCKECNYKTPRKYHLEEHMRIHTGDELKCKECNYKTSRKQDLITHIKIHTGHKLKCKECEYTTARKQDLNTHMKIHTGDELKCKECDYKTPRKQYLILHMKIHTGDKFKCTQCDYKTPKKYVLKEHMRIHTGDELKCTECDYKTPRKQDFNTHMKIHTSDELNCKECNYKTPRKQDLIKHMKIHTGDKLKCKECDYQTARKHDLNTHMKTHTGDEMKCKECDYKTVWRCNLNKHIKLHTDDKLKCKQCDYKTSKKYILKEYTRIHTDDELKCAECDYKTSRKQSLITHMKIHTSDKLNC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00854835;
90% Identity: -
80% Identity: -