Lyun011917.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001948.1:232906-235032[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.19 2.7 8.7 0.0 2 21 67 86 66 87 0.93
2 21 0.054 0.77 10.5 1.8 1 23 140 162 140 162 0.97
3 21 0.034 0.48 11.1 1.3 1 23 167 189 167 189 0.98
4 21 0.012 0.17 12.5 2.1 1 23 194 216 194 216 0.99
5 21 8.6e-05 0.0012 19.3 0.8 1 23 221 243 221 243 0.99
6 21 7.2 1e+02 3.8 0.7 1 8 248 255 248 262 0.93
7 21 7 99 3.8 0.1 10 23 267 280 264 280 0.87
8 21 8.6e-05 0.0012 19.3 0.8 1 23 285 307 285 307 0.99
9 21 0.00089 0.013 16.1 1.3 1 23 312 334 312 334 0.98
10 21 8.6e-05 0.0012 19.3 0.8 1 23 339 361 339 361 0.99
11 21 0.0059 0.083 13.5 1.4 1 23 366 388 366 388 0.99
12 21 0.018 0.25 12.0 0.4 1 23 393 415 393 415 0.98
13 21 8.6e-05 0.0012 19.3 0.8 1 23 420 442 420 442 0.99
14 21 8.6e-05 0.0012 19.3 0.8 1 23 447 469 447 469 0.99
15 21 0.0041 0.058 14.0 1.4 1 23 474 496 474 496 0.99
16 21 0.018 0.25 12.0 0.4 1 23 501 523 501 523 0.98
17 21 0.0081 0.11 13.1 0.3 1 23 528 550 528 550 0.98
18 21 0.041 0.58 10.8 0.2 1 23 555 577 555 577 0.98
19 21 4.1e-05 0.00058 20.3 2.7 1 23 582 604 582 604 0.99
20 21 0.13 1.8 9.3 1.2 1 23 609 631 609 631 0.98
21 21 0.0037 0.053 14.1 1.8 1 23 636 658 636 658 0.98

Sequence Information

Coding Sequence
atggATATTGATTCTATTGAAAGTAATGCAATCaaatctgaagtgattttaaGAGAAACGTTTTGTGGACAATATGGAGattATGGGGTTGAACAACTAAAAACTGAGCCAATAAATTACGAAGAGtcttttaaatgtaaggaagaagATATTTCTGTAGAGCAGTCGAACGTGCATGCTGTGCCGATTGAACAATTATATTGTAATGAGTGTGATTTTATGACAATAGAAAaagattctctaatagaacacttgaaaatcgctaaaaatgttcaatattgtTGTAAGGAGTGTAACTTTACAACCCAGTTACAATGTTctgtaaaaaaacattttgggATTCACAAAGGTGTTTTTCATACGAcccaaaatttatgtttaacacCACAGTGGAAAACATCAAGAAGTGgtgacaaatatatttgtaatcaatgtaattataccacattAACCAAACGCTCTCTAAGAAGACATGGTAAAATCCATAAAGAggctgaatataagtgtgaagaatgtgattataaaacagtgtggcaacatagtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaacatagtctaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgcggcaaggtagtctaaaggaacatgtcaaaattcatacaggtgataaatataagtgtaaagaatgtggttataaaaACAGTGTCGCAAAGAaggctaaaggaacatgtcaaaattcatacagtctaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattacaaaacagtgcggcaaggtagtctaaaggaacatgtcaaaattcatacaggtgataaatataagtgtaaagaatgtggttataaaacagTGTCGCAAAGAaggctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgcggcaaggtagtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgttgCAACGAagactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaaggTAGTCtcaaggaacatgtcaaaattcatacgggtgatgaatataagtgtaaagaatgtgattataaaacagtgcggcaaggtagtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgcggcaaggtagtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagactgtgattataaaacagtgttgCAAAGAAggctaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaaggAAGTCtcaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaaggaagtctaaaggcacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaaggtggtctaaaggaacatgtcaaaattcataaaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtcgcAACGTAGTCTAAAGCGACATCAAAAAATTCATGCTGGTGTTAGATATAcatgtaacgaatgtgattataaaacagtgtggctacatagtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtcgcGAAGAAGGCTAaaggaacacgtcaaaattcatagcAACAAGAATGCAGCCATGCTTAGCGGTAAACAACCAACACTATAA
Protein Sequence
MDIDSIESNAIKSEVILRETFCGQYGDYGVEQLKTEPINYEESFKCKEEDISVEQSNVHAVPIEQLYCNECDFMTIEKDSLIEHLKIAKNVQYCCKECNFTTQLQCSVKKHFGIHKGVFHTTQNLCLTPQWKTSRSGDKYICNQCNYTTLTKRSLRRHGKIHKEAEYKCEECDYKTVWQHSLKEHVKIHTGDEYKCKECDYKTVWQHSLKEHIKIHTGDEYKCKECDYKTVRQGSLKEHVKIHTGDKYKCKECGYKNSVAKKAKGTCQNSYSLKEHIKIHTGDEYKCKECDYKTVRQGSLKEHVKIHTGDKYKCKECGYKTVSQRRLKEHVKIHTGDEYKCKECDYKTVRQGSLKEHVKIHTGDEYKCKECDYKTVLQRRLKEHIKIHTGDEYKCKECDYKTVWQGSLKEHVKIHTGDEYKCKECDYKTVRQGSLKEHVKIHTGDEYKCKECDYKTVRQGSLKEHVKIHTGDEYKCKDCDYKTVLQRRLKEHIKIHTGDEYKCKECDYKTVWQGSLKEHVKIHTGDEYKCKECDYKTVWQGSLKAHVKIHTGDEYKCKECDYKTVWQGGLKEHVKIHKGDEYKCKECDYKTVSQRSLKRHQKIHAGVRYTCNECDYKTVWLHSLKEHVKIHTGDEYKCKECDYKTVSRRRLKEHVKIHSNKNAAMLSGKQPTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00854355;
90% Identity
-
80% Identity
-