Lyun011920.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001948.1:304010-306543[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.24 3.4 8.4 0.0 2 21 67 86 66 87 0.93
2 25 0.022 0.31 11.7 1.9 1 23 140 162 140 162 0.98
3 25 0.0079 0.11 13.1 1.1 1 23 167 189 167 189 0.98
4 25 0.02 0.28 11.9 1.8 1 23 194 216 194 216 0.98
5 25 0.0086 0.12 13.0 1.7 1 23 221 243 221 243 0.98
6 25 0.047 0.67 10.7 2.1 1 23 248 270 248 270 0.98
7 25 0.0026 0.037 14.6 1.6 1 23 275 297 275 297 0.98
8 25 0.041 0.59 10.8 1.3 1 23 302 324 302 324 0.98
9 25 0.022 0.31 11.7 0.4 1 23 329 351 329 351 0.98
10 25 0.00011 0.0015 19.0 0.8 1 23 356 378 356 378 0.99
11 25 0.0044 0.063 13.9 0.3 1 23 383 405 383 405 0.99
12 25 0.027 0.39 11.4 0.3 1 23 410 432 410 432 0.98
13 25 0.00016 0.0022 18.4 0.7 1 23 447 469 447 469 0.98
14 25 0.0044 0.063 13.9 0.3 1 23 474 496 474 496 0.99
15 25 0.065 0.92 10.2 0.2 1 23 501 523 501 523 0.98
16 25 0.0004 0.0057 17.2 3.8 1 23 528 550 528 550 0.98
17 25 0.02 0.28 11.9 1.8 1 23 555 577 555 577 0.98
18 25 0.0032 0.045 14.3 4.6 1 23 582 604 582 604 0.98
19 25 0.042 0.6 10.8 1.0 1 23 609 631 609 631 0.98
20 25 0.022 0.31 11.7 0.4 1 23 636 658 636 658 0.98
21 25 0.27 3.8 8.3 1.1 1 23 663 685 663 685 0.97
22 25 0.011 0.15 12.6 2.9 1 23 690 712 690 712 0.98
23 25 0.0075 0.11 13.2 0.7 1 23 717 739 717 739 0.98
24 25 0.0084 0.12 13.0 1.2 1 23 744 766 744 766 0.98
25 25 0.0004 0.0057 17.2 1.8 1 23 771 793 771 793 0.99

Sequence Information

Coding Sequence
atggATGTTGATTCTATTGAAAGTAATGCAATCaaatctgaagtgattttaacgGAAACGTTTTGTGGACAATATGGAGatTATGGGGTTGAACAACTAAAAACTGAGCCAGTAAATTACGAAGAATCTTTAAAATGCAAGGAAGAAGATATTTCTGTAGAGCAGACGAGCGTGCATGCTGTGCCGATTGAACAATTATCTTGTAATGAGTGTGATTTTATGACAATAGAAAaagattctctaatagaacacttgaaaattgctaaaaatgttcaatattattgtaaggaatgtaactttacaacccAGTTACAATGTTCTGTAAAAAAGCATTTTGGGATTCACAAAGGTGTTTTTCATACAACCCAAAATTTCTGTTTAACACCGCAGTGGAAAACTTCAACAAGTGgtgacaaatatatttgtaatcaatgtaattataccacattAACCAAACGCTCTCTAAGAAGACATGTTAAAATCCATAAAGAggctgaatataagtgtaaagaatgtgattataaaacaatgttgCAACcaaatctaaagcaacatgaaaaaattcatgcaggtgttAAATAtacatgtaaagaatgtgattataaaacagtgtggcaacatagtctaaaggaacacattaaaattcatacaggtgatgaatataagtgtaaagaatgtgactataaaacagtacaaaaacgatatataaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaacatagtctaaaggaacacgttaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtcgcAAAGAaggctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaagcagTGTGGcaacatagtctaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacggtgtggcAAGGTAGTCtcaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattacaaaacagtgcggcaaggtagtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaaggTAGTCTAAAGGCACATGTCAGAATTCattcaggtgatgaatataagtgtacagaatgtgattataaaacagtgtggcaaggTAGTCtcaaggaacatgtcaaaattcattacagTCTAAAGcgacatgaaaaaattcatgcTGGTGTTAGATAtacatgtaaagaatgtgattacaaaacagtgcggcaaggtagtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaaggTAGTCTAAAGGCACATGTCAGAATTCattcaggtgatgaatataagtgtacagaatgtgattataaaacagtgtggcaaggtggtctaaaggaacatgtcaaaattcataaaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtcgcAACATAGTCTAAAGcgacatgaaaaaattcatgcTGGTGTTAGATAtacatgtaaagaatgtgattataaaacagtttggcaacatagtctaaaggaacatatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtcgcAACGTTGTCTAAAGcgacatgaaaaaattcatgcTGGTGTTAAATAtacatgtaaagaatgtgattataaaacagtttggaaaaaaagtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaaggtagtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattacaaaacagtgtggcaaagaaggctaaaggaacacgtcaaaattcatgcaggtgatgaatataactgcaaagaatgtgattataaaacagtgtcgcaacgttgtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaaagtagtctaaaggaacatgtcaaaattcatacaggtgatgaatataattgtaaagaatgtgattataaaacagtgtcgcAAAGAAGGCTAaaggaacacgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtcgcAAAGTCGGCTAAAgcaacacgtcaaaattcatagcAACAAGAATGCAGCCATGCTTAGCGGTAAACAACCAATACTATAA
Protein Sequence
MDVDSIESNAIKSEVILTETFCGQYGDYGVEQLKTEPVNYEESLKCKEEDISVEQTSVHAVPIEQLSCNECDFMTIEKDSLIEHLKIAKNVQYYCKECNFTTQLQCSVKKHFGIHKGVFHTTQNFCLTPQWKTSTSGDKYICNQCNYTTLTKRSLRRHVKIHKEAEYKCKECDYKTMLQPNLKQHEKIHAGVKYTCKECDYKTVWQHSLKEHIKIHTGDEYKCKECDYKTVQKRYIKEHVKIHTGDEYKCKECDYKTVWQHSLKEHVKIHTGDEYKCKECDYKTVSQRRLKEHVKIHTGDEYKCKECDYKAVWQHSLKEHIKIHTGDEYKCKECDYKTVWQGSLKEHVKIHTGDEYKCKECDYKTVRQGSLKEHVKIHTGDEYKCKECDYKTVWQGSLKAHVRIHSGDEYKCTECDYKTVWQGSLKEHVKIHYSLKRHEKIHAGVRYTCKECDYKTVRQGSLKEHVKIHTGDEYKCKECDYKTVWQGSLKAHVRIHSGDEYKCTECDYKTVWQGGLKEHVKIHKGDEYKCKECDYKTVSQHSLKRHEKIHAGVRYTCKECDYKTVWQHSLKEHIKIHTGDEYKCKECDYKTVSQRCLKRHEKIHAGVKYTCKECDYKTVWKKSLKEHVKIHTGDEYKCKECDYKTVWQGSLKEHVKIHTGDEYKCKECDYKTVWQRRLKEHVKIHAGDEYNCKECDYKTVSQRCLKEHVKIHTGDEYKCKECDYKTVWQSSLKEHVKIHTGDEYNCKECDYKTVSQRRLKEHVKIHTGDEYKCKECDYKTVSQSRLKQHVKIHSNKNAAMLSGKQPIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00854402;
90% Identity
-
80% Identity
-