Lyun007372.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:11174788-11177613[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 1.5 22 5.9 0.3 1 23 91 113 91 113 0.97
2 27 0.00038 0.0054 17.2 1.6 1 23 141 163 141 163 0.97
3 27 0.2 2.8 8.7 2.5 1 23 168 190 168 190 0.98
4 27 0.24 3.4 8.4 0.1 5 23 199 217 198 217 0.95
5 27 0.00036 0.005 17.3 2.3 1 23 222 244 222 244 0.99
6 27 3.1e-05 0.00043 20.7 2.0 1 23 249 271 249 271 0.99
7 27 0.00036 0.005 17.3 2.3 1 23 276 298 276 298 0.99
8 27 3.1e-05 0.00043 20.7 2.0 1 23 303 325 303 325 0.99
9 27 2.7e-05 0.00038 20.9 1.7 1 23 330 352 330 352 0.99
10 27 3.1e-05 0.00043 20.7 2.0 1 23 357 379 357 379 0.99
11 27 0.0012 0.017 15.6 2.2 1 23 384 406 384 406 0.99
12 27 3.1e-05 0.00043 20.7 2.0 1 23 411 433 411 433 0.99
13 27 2.7e-05 0.00038 20.9 1.7 1 23 438 460 438 460 0.99
14 27 0.32 4.6 8.0 1.6 1 23 465 487 465 487 0.96
15 27 0.32 4.6 8.0 1.6 1 23 492 514 492 514 0.96
16 27 0.0008 0.011 16.2 1.1 1 23 519 541 519 541 0.99
17 27 0.0092 0.13 12.9 1.0 1 23 546 568 546 568 0.99
18 27 0.095 1.3 9.7 1.6 1 23 573 595 573 595 0.97
19 27 9.8 1.4e+02 3.4 4.2 1 23 600 625 600 625 0.72
20 27 0.011 0.16 12.6 1.0 1 23 630 652 630 652 0.99
21 27 3.6e-05 0.00051 20.4 1.8 1 23 657 679 657 679 0.99
22 27 0.0019 0.027 15.1 1.2 1 23 684 706 684 706 0.99
23 27 0.0019 0.027 15.1 1.2 1 23 711 733 711 733 0.99
24 27 8 1.1e+02 3.6 0.1 5 23 769 787 768 787 0.89
25 27 2.9e-05 0.00041 20.8 2.3 1 23 792 814 792 814 0.99
26 27 9e-06 0.00013 22.3 1.4 1 23 819 841 819 841 0.99
27 27 3.2 46 4.9 3.1 1 23 846 868 846 868 0.95

Sequence Information

Coding Sequence
atggatGTTTATTCAATAgcaaattgtgcaataaaatccgaagtgattttaaaagaaacatttgcgttttctggaaaatatgaagataGTGGTGAGGGTCAAGAACCGAAAACAGAACTAGCAGTTTATGaagaattgtttaaatgtaaagaagaaGATTCTGTAGAGCACATAGACATACACACTGCTCCGATGCAATGcattaatgaatgtaattttacgacaATGGAAAAGGAAATAGAACAtttggaaattattaaaaatgttcaatattcttGCGAGGAATGTAACTTTATAACACAGTTAGAATCTTCCATAAAagagcatttaaaaattcataatggaGTAGATGGTCAATATATTactgaagaatgtaattttaagatgGCAGAGCTCAAAACTGCAAGAATTCGCAAtgaatacatttgtaatgaatgtactTATAAGACATTTGttaaaagtaatctaaagagacatataaaaattcataaaggtgatgaatataattgtaaagaatgtgattataaaactgcatGGAAAAATCATCTAAGGGAACAtaccaaaattcatacaggcgatcaatataagtataaagaatgtgattataaaacagtgttgaaaaaacaactaaatgcacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtgcggAAGTATcgactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtgcggaaatatcaactaaaggaacacatcaaaattcataaaggtgatgaatataagtgtaaagaatgtgattacaaaactgTGCGGAAGTATcgactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtgcggaaatatcaactaaaggaacacatcaaaattcataaaggtgatgaatataagtgtaaagaatgtgattacaaaactgTGCGGCaatatcaactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtgcggaaatatcaactaaaggaacacatcaaaattcataaaggtgatgaatataagtgtaaagaatgtgagtataaaacTGTGCGGAAGTATcgactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtgcggaaatatcaactaaaggaacacatcaaaattcataaaggtgatgaatataagtgtaaagaatgtgattacaaaactgTGCGGCaatatcaactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgagtataaaacactgtggaaaaGTATGCTTAAGagacatatcaaaattcatacaggtgatgaatataaatgtaaagaatgtgagtataaaacactgtggaaaaGTATGCTTAAGagacatatcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaatctgTGCAGGAATATcgactaaaggaacacatcagaattcatacaggtgataaatataagtgtaaagaatgtgattataaaactgtatggaaaaatcaactaaaggaacacatcaaaattcatacaggtgacgaatataagtgtaaagaatgtgattataaaacactgtggaaaaGTATGCTTAAGagacacatcaaaattcatacaggtgataaatataaatgtaaagaatgtgattataaagctGTGCAGAAATATCAAGAATATcgactaaaggaacacatcagaatgcatacaggtgatgaatataagtgtaaagaatgtgattataaaactatatggaaaaatcaactaaaggaacacatcaaaattcatacaggtaatgaatataagtgtaaagaatgtgattataaaactgggcggaaatatcaactaaaggaacacatcagaattcatacaggtgatgaatataagtgtaaagaatgtgattataaatctgTGCAGGAATATcgactaaaggaacacatcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaatctgTGCAGGAATATcgactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaagaatgtgattataaaacactgtggaaaaGTATGCTTAAGagacacatcaaaattcatacaggtgatgaatataagtgtaaaagaatgtgattataaaactatatggaaaaatcaactaaaggaacacatcaaaattcatacaggtaatgaatataagtgtaaagaatgtgattataaaactgggcggaaatatcaactaaagcaacacatcagaattcatacaggtgatgaatataagtgtaacgaatgtgattataaaactgcacGGAAATATCagctaaaggaacacatcagaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacggtgtggaaaaattgtataaagaaaCATGTTAatattcatacaggtgacaaaatATAA
Protein Sequence
MDVYSIANCAIKSEVILKETFAFSGKYEDSGEGQEPKTELAVYEELFKCKEEDSVEHIDIHTAPMQCINECNFTTMEKEIEHLEIIKNVQYSCEECNFITQLESSIKEHLKIHNGVDGQYITEECNFKMAELKTARIRNEYICNECTYKTFVKSNLKRHIKIHKGDEYNCKECDYKTAWKNHLREHTKIHTGDQYKYKECDYKTVLKKQLNAHIKIHTGDEYKCKECDYKTVRKYRLKEHIKIHTGDEYKCKECDYKTVRKYQLKEHIKIHKGDEYKCKECDYKTVRKYRLKEHIKIHTGDEYKCKECDYKTVRKYQLKEHIKIHKGDEYKCKECDYKTVRQYQLKEHIKIHTGDEYKCKECDYKTVRKYQLKEHIKIHKGDEYKCKECEYKTVRKYRLKEHIKIHTGDEYKCKECDYKTVRKYQLKEHIKIHKGDEYKCKECDYKTVRQYQLKEHIKIHTGDEYKCKECEYKTLWKSMLKRHIKIHTGDEYKCKECEYKTLWKSMLKRHIKIHTGDEYKCKECDYKSVQEYRLKEHIRIHTGDKYKCKECDYKTVWKNQLKEHIKIHTGDEYKCKECDYKTLWKSMLKRHIKIHTGDKYKCKECDYKAVQKYQEYRLKEHIRMHTGDEYKCKECDYKTIWKNQLKEHIKIHTGNEYKCKECDYKTGRKYQLKEHIRIHTGDEYKCKECDYKSVQEYRLKEHIKIHTGDEYKCKECDYKSVQEYRLKEHIKIHTGDEYKCKNVIIKHCGKVCLRDTSKFIQVMNISVKECDYKTIWKNQLKEHIKIHTGNEYKCKECDYKTGRKYQLKQHIRIHTGDEYKCNECDYKTARKYQLKEHIRIHTGDEYKCKECDYKTVWKNCIKKHVNIHTGDKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00854224;
90% Identity
-
80% Identity
-