Lyun007374.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:11224053-11229369[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 1.9 27 5.6 0.4 1 23 91 113 91 113 0.96
2 24 0.00031 0.0044 17.5 2.3 1 23 141 163 141 163 0.98
3 24 0.036 0.51 11.0 0.8 4 23 171 194 169 194 0.86
4 24 0.00019 0.0027 18.2 2.5 1 23 199 221 199 221 0.99
5 24 3.1e-05 0.00044 20.7 2.0 1 23 226 248 226 248 0.99
6 24 9.7e-05 0.0014 19.1 2.1 1 23 253 275 253 275 0.99
7 24 6.2e-05 0.00087 19.7 2.3 1 23 280 302 280 302 0.99
8 24 3.1e-05 0.00044 20.7 2.0 1 23 307 329 307 329 0.99
9 24 9.7e-05 0.0014 19.1 2.1 1 23 334 356 334 356 0.99
10 24 6.2e-05 0.00087 19.7 2.3 1 23 361 383 361 383 0.99
11 24 1.8e-05 0.00025 21.4 2.5 1 23 388 410 388 410 0.99
12 24 3.1e-05 0.00044 20.7 2.0 1 23 415 437 415 437 0.99
13 24 9.7e-05 0.0014 19.1 2.1 1 23 442 464 442 464 0.99
14 24 6.2e-05 0.00087 19.7 2.3 1 23 474 496 474 496 0.99
15 24 0.00015 0.0021 18.6 2.5 1 23 501 523 501 523 0.99
16 24 2.9 41 5.0 0.2 9 23 564 578 562 578 0.88
17 24 6.2e-05 0.00087 19.7 2.3 1 23 583 605 583 605 0.99
18 24 0.00067 0.0095 16.5 1.9 1 23 610 632 610 632 0.99
19 24 0.00011 0.0016 18.9 2.2 1 23 637 659 637 659 0.99
20 24 6.9e-05 0.00097 19.6 1.4 1 23 664 686 664 686 0.98
21 24 0.097 1.4 9.7 1.6 1 23 691 713 691 713 0.97
22 24 4.5e-05 0.00064 20.1 1.0 1 23 718 740 718 740 0.99
23 24 0.055 0.78 10.4 4.3 1 23 745 767 745 767 0.98
24 24 1.7e-05 0.00024 21.5 1.6 1 23 772 794 772 794 0.99

Sequence Information

Coding Sequence
atggatGTCGATTCAATAgcaaattgtgcaataaaatccgaagtgattttaaaagaaacatttgcgTTTTCTGGAAAGTATGAAGataGTGGTGAGGGTCAAGAACCAAAAACAGAACTAGCAGTTTACGaagaattgtttaaatgtaaagaagaaGATTCTGTAGTGCACATAGACATACACACTGCTCCGATCCAATGcattaatgaatgtaattttacgacaATGGAAAAGGAAATAGAACAtttggaaattattaaaaatgttcaatatacTTGCGAGGAATGTAACTTTATAACACAGTTAGAATCTTCCATAAAAGAGCATTTAAAACTTCATAATGGAGTCGATGGTCAATATATTactgaagaatgtaattttaagacgGCGGAGCTCAAAACTGCAAGCATTCGCAAtgaatacatttgtaatgaatgtacaTATAAGACAGTCGTCAAAAGTCACCTAAAGAGacacataaaaattcataaaggtgatGATGTTACCTGTGACAAATAtagtaaagaatgtgattataaatcagtaaggaaaaatcaactaaaggaacacatcaaaattcatacaggcgatgaatataagtgtaaagaatgtgattataaaactgtgcggaaatttcaactaaaggaacacctcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtgcggaaatatcaactaaaggaacacatcaaaattcatacaggcgatgaatataagtgtaaagaatgtgattataaaactgttcgGAAATttcaactaaaggaacacatcaaaattcatacaggtgatgactataagtgtaaagaatgtgattataaaactgtgcggaaatatcaactaaaggaacacctcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtgcggaaatatcaactaaaggaacacatcaaaattcatacaggcgatgaatataagtgtaaagaatgtgattataaaactgttcgGAAATttcaactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtgcggaaatatcaactaaaggaacacctcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtgcggaaatatcaattaaaggaacacatgaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtgcggaaatatcaactaaaggaacacatcaaaattcatacaggcgatgaatataagtgtaaagaatgtgattataaaactgttcgGAAATttcaactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtgatgaatataagtgtaaagaatgtgattataaaactgtgcggAAATATCAATTAAAGGAACAcctgaaaattcatacaggtgatgactataagtgtaaagaatgtgattataaaactatgcggaaatatcaactaaaggaacacatcaaaattcatacaggcgatgaatataagtgtaaagaatgtgattataaaactgtggcggaaatatcaactaaaggaacacattcaaaattcatacaggtgatgaatataagtgtaaagaatgttgattataaaactgtgcggaaatatcaactaaaggaacacctcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtgcggAAATATCAATTAAAGGAACAcctgaaaattcatacaggtgatgactataagtgtaaagaatgtgattataaaactgtgcggAAAAATCGTCTAagggaacacatcaaaattcatacaggcgttgaatataagtgtaaagaatgtaattataaaactgtacggaaaaatcaactaaaggaacacatcaaaattcatacaggtaatgaatatatgtgtaaagaatgtgattataaaactgtgcggaaatatcaactaaaggaacacatcaaaattcatacaggtaatgaatataagtgtaaagaatgtgattataaaacactgtggaaaaGTATGCTTAAGagacacatcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaactgtgcaggaatatcaactaaaggaacacatcagaattcatacaggtgatgaatataagtgtaaagaatgtgactataaaacggtgcggaaaaattgtataaagacacatgttaaaattcatacaggtaatgaatataagtgtaaagaatgtgattataatactgTGCGgaaatatcaactaaaggaacacatcagaattcatacagaaatacagtttactaaaaagatgtggatgttgtatgcagaacagcattggaccaaagccatTGATTTAAAGTCGGCAGTAGAACGCTTATATAAAAAACTcagtgctttagaatttgatgctgatcataaAGCAAttaagcaatttatgggatggaaagatattacacggtccaacaatgtgaagagctccgagataaatataagattggaaggaaggtgtgtagaaagttccttaaaggaaagacgtgttctcaatgtcttgcaAAACGCATGA
Protein Sequence
MDVDSIANCAIKSEVILKETFAFSGKYEDSGEGQEPKTELAVYEELFKCKEEDSVVHIDIHTAPIQCINECNFTTMEKEIEHLEIIKNVQYTCEECNFITQLESSIKEHLKLHNGVDGQYITEECNFKTAELKTASIRNEYICNECTYKTVVKSHLKRHIKIHKGDDVTCDKYSKECDYKSVRKNQLKEHIKIHTGDEYKCKECDYKTVRKFQLKEHLKIHTGDEYKCKECDYKTVRKYQLKEHIKIHTGDEYKCKECDYKTVRKFQLKEHIKIHTGDDYKCKECDYKTVRKYQLKEHLKIHTGDEYKCKECDYKTVRKYQLKEHIKIHTGDEYKCKECDYKTVRKFQLKEHIKIHTGDEYKCKECDYKTVRKYQLKEHLKIHTGDEYKCKECDYKTVRKYQLKEHMKIHTGDEYKCKECDYKTVRKYQLKEHIKIHTGDEYKCKECDYKTVRKFQLKEHIKIHTGDEYKCDEYKCKECDYKTVRKYQLKEHLKIHTGDDYKCKECDYKTMRKYQLKEHIKIHTGDEYKCKECDYKTVAEISTKGTHSKFIQVMNISVKNVDYKTVRKYQLKEHLKIHTGDEYKCKECDYKTVRKYQLKEHLKIHTGDDYKCKECDYKTVRKNRLREHIKIHTGVEYKCKECNYKTVRKNQLKEHIKIHTGNEYMCKECDYKTVRKYQLKEHIKIHTGNEYKCKECDYKTLWKSMLKRHIKIHTGDEYKCKECDYKTVQEYQLKEHIRIHTGDEYKCKECDYKTVRKNCIKTHVKIHTGNEYKCKECDYNTVRKYQLKEHIRIHTEIQFTKKMWMLYAEQHWTKAIDLKSAVERLYKKLSALEFDADHKAIKQFMGWKDITRSNNVKSSEINIRLEGRCVESSLKERRVLNVLQNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00854257;
90% Identity
-
80% Identity
-