Lyun014971.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- Paxbp1
- Assembly
- GCA_013368075.1
- Location
- JABVZV010002120.1:103210-106824[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.33 3.2e+03 -2.4 0.4 51 82 46 85 34 130 0.46 2 2 5.3e-30 5.1e-26 92.0 0.1 3 272 508 715 506 717 0.92
Sequence Information
- Coding Sequence
- ATGTCTTTATTTAGAAAACCCAAAAAGACAATACAAAGGCGAGTGTTTAGTGAACGCGATGACGACGAAGAGGACCCAATAGATGTTCAAAAAAACTATGCACTTACCGAGAAGGAACTcaagaaaaaagacaaagataaaattaaacatattcaTAAAAAGCAACCACTGCTAAGTTTTGAAACTGAAGAAGAAGGAGAAGTGTTTCAAGTGAAAAAATCGTCACACAGTAAAAGGATAATGAAGTTTTATGAGAAAGAACGGCAGAAGAAAAAGGAAGCGAAACCTGAGAAAGAAGATGTTCGATTAAAAGAGCCCGTTACCGAAATAGTAATGGACGATTTGGTGATGAAAGTTAATACAAGTCATAAGTCAATGACAAAGTCATCTACCTCTCCAATTATTCTTACTGGCAGAGATGCACATTGTGCAGGAAAAGATGATTTATCTTCAGAAGACGATGACGAAACTCTCAGACATAAGTTTTCTAAACCAGATAATGTGAAAATATTGTTAGAATCTGGAATCATTCCTGATGCGGCTATGATTCATGCAGCAAGAAAACGGAGACAAAGAGCTAGGGAATTGGGAGGAGATTTCATACCAGTCGAAGAAGAAGAACCTGAAGgTACCAATAGATTACATCGTGAAGAAGATCACGACGAAGCGAGTGATGAAGAACGAATTGATATGGATGCTAACCCAGAAATTCGTGATCAGGAAAGAAGGCGTGAACAGTTCTTAGCAGCTCAGGAGTCAGATGAAGAAGCTGATCAAGAATTGGATGAATGGGAAAATCAACAGATTAGAAAAGGCGTTACAGGGGCGTCCGCAAATATTCAATCCGAATATGTGTATACCGATTATAGCGCTGCAATGACAACTTCAACACAAGTTCCAATAATAGATCCTAATACACAATGTACACCTGAAGCCATAGttgaaaaattaagagaaagATTTGAAGCAGTTTGTACATCTAGAAATAATCATATGCAGCAATTAGTTCATGTGCAAGATGATTTGGTGGAAGTGATGAATGATTTAGAAGACCTAAATAAACGTGCTCCGATTGCCGCCGagagatttaaattttatcaagaatTACGTGGTTATATTACTGATTTAGTTGAGTGTTTAGATGAGAAAGTTGGGGTAATAACTGACTTAGAACAACGGGCATTGAATCTATTTGCTCATAAAGCTGAATGGCTCATTGAAAGAAGAAGGCAGGATGTTAGAGATCAAGCTGAAGAACTTACCAATATTGCAAAGGGTGTTGTCAGAAGAGCTGCCGAAGATGAAGATAAGGTTCGTAGAGCAGCTGAAAGAGAAGGACGTAGATCACGCCGCCGCCGCGCTAGAGAACAACAAGGTCAACCTAAACATGTGGAAGGTATGTCTAGTGATGACGAAATTACTCAGCAAGACATGCTTACTTTTGATAAAGAAAGGGAGCAAATTGAAAGTGAAATCCAAGAAGTGTTTGAAGATGTAGTGGAAGAATATTCATcagttgcaaatattttaatacgtttTGAGCAATGGAGAGAAACCGATATGAGTACATACACTGAGGCATATGCAACTTTTTGCTTACCTCGCATTGTTGGGCCATTGATACGATTAAATCTAATATTTTGGGACCCTCTTATTGAATCTGTAGAACTAGAAAAGTTGGAATGGTATCGCACTTTGGCTTTGTACGGATTACATGATGACGAAACTGAAACAGCTCTAAGTAAAGATCCTGACATTAATTTACTACCTACAATTGTAGAGAAAATTATAGTACCTAAATTAGATAAATTAGTAGATAAATGTTGGGATCCATTATCAAGTTCACAAACACTGAAACTTGTAGGAATTTTAAGTCGTTACATTCGGCGGTTCCCTACTTTGGGCCCAGGCAGTAAACTACTACAAAATCTATTTAATGCAATTTTACACAAACTTAAAGGAGCTTTAGAAAATGACGTTTTTATTCCTATTACATTGAAGTTATCTGAAAGCAAGTCATCTTTCTTTCAACGTCAGTTTGCTAGCGGATTAAAACTACTGCGCAACATTACCTCCTGGCAAGGAATTTTGAATGATAATACTTTAAAAGATATTGCTTTAAATGCACTATTGAATAGATATTTACTTAGCGCAGTTAAAGTATGTCAATTAACAGATGCAGTAGCAAAAGTTGGGTTAATCAGTCATATCCTTCCTCGTGTATGGCTTCAAAGTAATAATTCGCAATTACAAATGTTTAGTGGATGTGTTACAAATTTTGCTCAGCAACTTGATAGGGAAAATCCATTACATTTAGAATCCATTGAAACATTATCTAATGTTCTTAAGTCTCTACGTAATTAA
- Protein Sequence
- MSLFRKPKKTIQRRVFSERDDDEEDPIDVQKNYALTEKELKKKDKDKIKHIHKKQPLLSFETEEEGEVFQVKKSSHSKRIMKFYEKERQKKKEAKPEKEDVRLKEPVTEIVMDDLVMKVNTSHKSMTKSSTSPIILTGRDAHCAGKDDLSSEDDDETLRHKFSKPDNVKILLESGIIPDAAMIHAARKRRQRARELGGDFIPVEEEEPEGTNRLHREEDHDEASDEERIDMDANPEIRDQERRREQFLAAQESDEEADQELDEWENQQIRKGVTGASANIQSEYVYTDYSAAMTTSTQVPIIDPNTQCTPEAIVEKLRERFEAVCTSRNNHMQQLVHVQDDLVEVMNDLEDLNKRAPIAAERFKFYQELRGYITDLVECLDEKVGVITDLEQRALNLFAHKAEWLIERRRQDVRDQAEELTNIAKGVVRRAAEDEDKVRRAAEREGRRSRRRRAREQQGQPKHVEGMSSDDEITQQDMLTFDKEREQIESEIQEVFEDVVEEYSSVANILIRFEQWRETDMSTYTEAYATFCLPRIVGPLIRLNLIFWDPLIESVELEKLEWYRTLALYGLHDDETETALSKDPDINLLPTIVEKIIVPKLDKLVDKCWDPLSSSQTLKLVGILSRYIRRFPTLGPGSKLLQNLFNAILHKLKGALENDVFIPITLKLSESKSSFFQRQFASGLKLLRNITSWQGILNDNTLKDIALNALLNRYLLSAVKVCQLTDAVAKVGLISHILPRVWLQSNNSQLQMFSGCVTNFAQQLDRENPLHLESIETLSNVLKSLRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00838556;
- 90% Identity
- -
- 80% Identity
- -