Lhir010511.1
Basic Information
- Insect
- Lagria hirta
- Gene Symbol
- -
- Assembly
- GCA_947359425.1
- Location
- OX375801.1:24688426-24693234[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-12 7.4e-09 35.8 0.0 9 71 212 277 206 280 0.89 2 2 1.7 6.3e+03 -2.4 0.0 30 47 560 578 550 587 0.84
Sequence Information
- Coding Sequence
- ATGGGAGATATCAAGAAAGGTGCTGGGAAAAGTGATAAGATTGCTGAAGCTATGGAGGTTGACGCTCCTGACAACCCCAAAATGGAGTCCAAGGTGAAGAAACAGTTAAGCGATAATAAAAAATCGGGAGATGAATCTTTGAAAGACGGTAATGATAGTAAACTCTTTCCAAATGAGGGAAATGCAAAAAAACGGTCAGTCAAAAGGAAAAGTGAAGACAGTGTTTCAGAGGAAAGCGTCATAGATGCGAAAGAGGGGCTCTTGAAGGTGCCGAAAGGCAGTGAGAAAGATGACTCATCTGCCGAATCCGATTTGAATCTTCCCACATTCGACAAGAGTTTAGGTAAAGGCAAACGTGCAAGAATTCCCAATAAACGCTATAGTGACATTCTGTTATCACCGTCAAGACCACAAAAGCAGCCAAATTTTTCTGTTGAAAATGGCGATCAAGTCAGGATTGAAAAAATTGATTCTGAAAATGATGAAGAACTTTCGAATGTAGCAACGACCGGTGCTTTGGTCAAATCGCGTTCAACTACCAACAGTCCTATAGCAAAAAGAAAACCCTCTAATATATCTAAATCCTCAGGTCAAGCTAAAGTCACAGCAAATCCTTCCGACCCCAGATATTTAAAACCATTTGAATTAGGATGGAAACGTGAATTGGTTTATCGAGCTGGTACAATAAATTCACCATCGGAAAATGTAGGCAAACGTGCTGGTGATATATATTATTATACACCAAGTGGGAAAAAAATACGCTCAATGCGAGAAATTACCGAAAATATAAGAGACAGTGACTTAACATTAAATAATTTTCTATTTTTACGCGAACCCGTCGGTATTAATGATCCTGAAAAAGAAATCATTCGAGACGCCAAAATAATCACTAAAATGGGAAATACAAAGAAACTTGCCGGAAAAGTGGGAAGCAAAATTGCTGGCGATAGTAGCGCTTCTTCGCCGATACCGAAAAGTTCTGGAAACATCAAAGTTAAAGTACAACCGAGTCGAATTAATAAAGGTGAGAAAAAGGCTAAAGTGGAAGAAGATGTGTCTACAGAAGTGAATAATTCTCGACGACCTGGGGTCAATAAGAAAACACCGGCCAAGGCTAATACTGTGGAAATGGAGAACAAACCTTGTCAGCCATGTTCGATTCGATGTCAAGGCGTTATGGGGATGGTACCAACACTTCAATGCCGTCTATGTTTATGCCTCTATCATTATGAATGCGTTGGATTATCATCACAGATACAAATCACATCATACGTATGCAAGAATTGTCAACTTGAACATGGTCAAGCAGTGGCAACACCAGCTTCAATTGTGCTTCCACCTCTAACTCCTATAAATCCGTTAAAAACATTTTCGGCGCAATCTGCTGTACCACAATTACCACGAGTCACTTGTTCACCAAAAGAATCGCCGCTTCACGATAGTAGTGCTTCTATAATGTCTCGGCTTGTTCAAATGCCAAAAATTGGTAAAGATGCGCCTGCCACTCAACCGGTGAAAACAATTGAATCGAAGAGTATAGTTGGTTCCGTAACGTCGTGGTTGCCACATTCAAGTACAATTCAAGTTGAGCAAAGAAATAAAGAGAACCAGCCTGTGGAAGCGCCAAGACCGCAATATTTGGAATATTTAGCTGGTCGTAAATTTTTAATTATACCTAAACATAATGTGGTATCAATATCTCCAACAGTTGGAAATAAAATCCATCAAAAGCCTCTCAATAATTTAATTGAAAATATTAATGAAGGAAAAGATATTGCGAATAATAATCAAGAGGTATTGGCACCGGATGATCAAAAGTTGCTAGAATTTAATAATTATAGAAATGCAGGACCTAAAACACGCATGGCTATTGCTACTTCTAAAAATATCGATGGTGGAGATTCGAAATTTATGGAATGCTACTTACAGAATTTGTGTTTAGGCTACAAAACATTATTGCATATTTTTCAGTATTTAAAAGTGCAAGATTTATTGCGAGCTGGTTGTGTTTGTACGATGTGGAGAGATATCGCAAATCATCCTTCATTATGGCGTACAGTTCGAATGAAAAATTCACAAATCTATAGTTTTCAAGGCTTTTCCGAGACGCTTCGAAAACATGGTACGATTCATTTAGATTTGAGGAAAATGCTATTGTTTCCTCATGAAACGAAAGAGGTTTGGGGCGAATTTTCTGAAGCGATTAAAAATGTACAAACGTTGCGAAAGATAGAATTTTGTAGATGTCCAACATCTGTTATCGAGAATGTAGCAGCGTCTAATCCAGAATTAGAAGTAATTAATGCTTTGGCAATACGAGGGGAGCATTTAAGTCTTGTTTCTTTATCATCTTTGAATAATTTGAAAGAATTGAGATTAAAATCACCGAGTGGATTGATATTAACATCAGGAATACAGTCTTTGACAACATTGGAAAATATAAAACATCTATCATTGACAAGTGTGAAAGATCTTTACAAGCAAGATCTGACAGTCATTGCTGCACTAGTCAATCTTGTATCGTTGGATATAGGAGAATGTGTTGATTTTCCTGAAAATTTTGGTACAAATGTATTAAGTCAACTTACAAAGCTTGAGAAATTACGGCTGGAAAAGGGTCAGGGAACGTGTCATACGTTTGATATGCTTGCAGCGATTGAAGCGATGTCACGGCTGGAGCAGCTAGAACTAGTTAATTTTGATATAAAACCAGGCTTTGATGTAGCGTTAGGGGGCTGTACTAATATTAAAAAACTTCTAATAATACCAACTTACATATCGCAGAGTGCCACAACAAATCATATGGTTTTAGGGGGCGTTGCAAGGCTACAGACAAGCTTAACTCATTTCGTATGGGGGATTACTTTGGAGTTATTGCGAGTTACTGAATTGTTTGTTGATCAAAGCGAACACGCAGATAAGAAGTTGGCTGGTTGGGGTGATAGTATTCCTGTATTAAAGCCGGTTCCTTTAGGCAGTGAAAATAATGAGATTCCTCCAGCAGATGAACCTCCAAAGGTTGAAATCATACCGTTATCAAAACTCCAAAAATTGCTCCTTCAAAGTTTATCAAATACGAAAGTGAAAATTTTGAAAATACCTTTTCATGCCACTTGGAGGCAGAGTTTTGTCGATACGATTAACAATTAG
- Protein Sequence
- MGDIKKGAGKSDKIAEAMEVDAPDNPKMESKVKKQLSDNKKSGDESLKDGNDSKLFPNEGNAKKRSVKRKSEDSVSEESVIDAKEGLLKVPKGSEKDDSSAESDLNLPTFDKSLGKGKRARIPNKRYSDILLSPSRPQKQPNFSVENGDQVRIEKIDSENDEELSNVATTGALVKSRSTTNSPIAKRKPSNISKSSGQAKVTANPSDPRYLKPFELGWKRELVYRAGTINSPSENVGKRAGDIYYYTPSGKKIRSMREITENIRDSDLTLNNFLFLREPVGINDPEKEIIRDAKIITKMGNTKKLAGKVGSKIAGDSSASSPIPKSSGNIKVKVQPSRINKGEKKAKVEEDVSTEVNNSRRPGVNKKTPAKANTVEMENKPCQPCSIRCQGVMGMVPTLQCRLCLCLYHYECVGLSSQIQITSYVCKNCQLEHGQAVATPASIVLPPLTPINPLKTFSAQSAVPQLPRVTCSPKESPLHDSSASIMSRLVQMPKIGKDAPATQPVKTIESKSIVGSVTSWLPHSSTIQVEQRNKENQPVEAPRPQYLEYLAGRKFLIIPKHNVVSISPTVGNKIHQKPLNNLIENINEGKDIANNNQEVLAPDDQKLLEFNNYRNAGPKTRMAIATSKNIDGGDSKFMECYLQNLCLGYKTLLHIFQYLKVQDLLRAGCVCTMWRDIANHPSLWRTVRMKNSQIYSFQGFSETLRKHGTIHLDLRKMLLFPHETKEVWGEFSEAIKNVQTLRKIEFCRCPTSVIENVAASNPELEVINALAIRGEHLSLVSLSSLNNLKELRLKSPSGLILTSGIQSLTTLENIKHLSLTSVKDLYKQDLTVIAALVNLVSLDIGECVDFPENFGTNVLSQLTKLEKLRLEKGQGTCHTFDMLAAIEAMSRLEQLELVNFDIKPGFDVALGGCTNIKKLLIIPTYISQSATTNHMVLGGVARLQTSLTHFVWGITLELLRVTELFVDQSEHADKKLAGWGDSIPVLKPVPLGSENNEIPPADEPPKVEIIPLSKLQKLLLQSLSNTKVKILKIPFHATWRQSFVDTINN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -