Lhir013314.2
Basic Information
- Insect
- Lagria hirta
- Gene Symbol
- bab1
- Assembly
- GCA_947359425.1
- Location
- OX375800.1:12129269-12142336[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3e-11 5.2e-08 33.2 0.0 1 35 65 100 65 105 0.93 2 3 1.8e-17 3.1e-14 53.1 0.0 1 43 195 238 195 240 0.95 3 3 2.5 4.4e+03 -1.8 1.1 6 15 324 333 322 338 0.87
Sequence Information
- Coding Sequence
- ATGATCTTGTCTTTTGGTTCAAGACAAGATCATATCGTCGCAAAAAATAAGAAGACTTCAGAGACGCCTATTCCTAAAACTGAAGAATGCATTATTCTAGAACTATTAAAACATCACACTTGTTGCAAAAAGCTGTCTTTGCTGAGCAGACATTACCCAAAGTTATTACTAAAACTAAAGACTCCAACGTGGACTCAAGACCAATTAAAAGAGGCTATAGAAGCGGTAGTGACTCAAAAGATGCGATTTACTCAAGCGTCTACTCGTTACGGTATACCGAAAGGAACACTATACGACAATATTCTAGGAAAATCGAAGAGAATGGCGGTTTTGGAAGAAGCTGGATTAACATCTTATGAAGAAGAAGGAGTATTGGAATTTTGCTGTCAGGTTTCTATATCGCCCTACAATAGGCGTACAAAAAAATCTCTTAGATCAGTTCTTAATTTTGTGGAAAAACTTAGACGGGCACCAGACAGCTACCAATACCAGTTGCAATCCATGTGGCAAAAATGTTGGAATACGAATCAAAGTCTTGTACACAATTTGCGCTTCCGTGAAAGAGGACCGTTGAAATCCTGGCGTCCTGAAACCATGGCCGAAGCAATATTCTCGGTGTTGAAGGAGGGCTTATCCTTATCCCAAGCTGCCAGGAAATATGATATTCCCTATCCCACATTTGTTCTTTACGCAAATCGAGTGCACAACATGTTAGGACCTTCCGCAGACGGTGGATCAGACTTACGGCCTAAAGGTCGGGGACGTCCCCAAAGGATTTTATTAGGAGTATGGCCAGATGAACACATACGAGGCGTTATCAGAGCTGTAGTATTTAGGGATTCGCATCAAATCAAAGACGAGGCTCACCTTACCTATCCGCGAATACACGATGGCGTTAGTATACACAGCTACCCTAACAACACATGCAGCAATGGCTCTGACCCTAATGTGTCTCCCGGTGCTGCGGCGGCGGCTGCTGTAGCCGCAGTAGCGCAAGGTCTTCGACAGCAAATGTGCAGTATGGTAGCCGCAGCGCAACATCAAAGCTCTGGTCACGACACGAATCCAGTGGCAAGTCTTGTCAATTCCTTAGCGTTGGCAGGACATTGTGGTAATGTATCTATGTCCAGTAATGGTGCTGCTCCTATAACCATGAGCCATGTGACCTCTATGCGAAGCATGAGTAGCCCAGCAGGCAGTATTCAAGATCTTAGAATAAGTCCTGCAGAATCAGCTTTAGAAAGTCCTATTTCCTCTCCTCTTGGACTGACTGTGTCAAGCAGTATGGAGCCAGCGATCAACATGAATATAGGGAATAGTATGGATGTTGGTATTGGAGGAATGACGTACAAGCCCACTCGGTCGTTTACGTCACCAAGACCAGAGAATCTCTTCCAAGAGGATATTGATGAATTGGTTAAGCCTATGCATGCTTCCACTGGGCGCCCAAAAGACTCAATGACAACAATTAAAATGGAACCATTAGCAGAGTGTCGTGGCGAATGA
- Protein Sequence
- MILSFGSRQDHIVAKNKKTSETPIPKTEECIILELLKHHTCCKKLSLLSRHYPKLLLKLKTPTWTQDQLKEAIEAVVTQKMRFTQASTRYGIPKGTLYDNILGKSKRMAVLEEAGLTSYEEEGVLEFCCQVSISPYNRRTKKSLRSVLNFVEKLRRAPDSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHQIKDEAHLTYPRIHDGVSIHSYPNNTCSNGSDPNVSPGAAAAAAVAAVAQGLRQQMCSMVAAAQHQSSGHDTNPVASLVNSLALAGHCGNVSMSSNGAAPITMSHVTSMRSMSSPAGSIQDLRISPAESALESPISSPLGLTVSSSMEPAINMNIGNSMDVGIGGMTYKPTRSFTSPRPENLFQEDIDELVKPMHASTGRPKDSMTTIKMEPLAECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00395175;
- 90% Identity
- -
- 80% Identity
- -