Basic Information

Insect: Lacanobia wlatinum
Gene Symbol: -
Assembly: GCA_947578705.1
Location: OX388033.1:7903294-7913665[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2 1.8e+02 3.6 0.2 3 23 118 138 116 138 0.95

2 18 0.0057 0.5 11.6 0.7 2 23 142 163 141 164 0.94

3 18 0.6 53 5.2 3.7 2 23 215 237 214 238 0.91

4 18 0.0038 0.33 12.2 0.5 2 23 393 415 392 415 0.95

5 18 0.081 7.1 8.0 0.2 1 20 423 442 423 444 0.94

6 18 0.0019 0.17 13.1 0.6 2 23 454 475 453 475 0.94

7 18 8.6 7.5e+02 1.6 1.5 1 23 491 514 491 514 0.84

8 18 0.0041 0.36 12.0 1.7 1 23 523 546 523 546 0.94

9 18 8.9 7.8e+02 1.5 2.1 1 23 675 698 675 698 0.92

10 18 5.4e-05 0.0047 18.0 1.8 1 23 704 726 704 726 0.96

11 18 0.0011 0.099 13.8 1.9 1 23 733 755 733 755 0.98

12 18 9e-05 0.0079 17.3 2.3 1 23 760 782 760 782 0.96

13 18 0.00033 0.028 15.5 1.3 1 23 788 810 788 810 0.98

14 18 6e-05 0.0052 17.8 1.3 5 23 820 838 817 838 0.95

15 18 0.00058 0.051 14.7 2.6 2 23 845 866 845 866 0.98

16 18 0.00089 0.078 14.1 0.7 2 23 874 896 873 896 0.97

17 18 2.9e-05 0.0025 18.8 0.5 1 23 901 923 901 923 0.97

18 18 0.00052 0.045 14.9 1.1 2 23 930 952 929 952 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2	1.8e+02	3.6	0.2	3	23	118	138	116	138	0.95
2	18	0.0057	0.5	11.6	0.7	2	23	142	163	141	164	0.94
3	18	0.6	53	5.2	3.7	2	23	215	237	214	238	0.91
4	18	0.0038	0.33	12.2	0.5	2	23	393	415	392	415	0.95
5	18	0.081	7.1	8.0	0.2	1	20	423	442	423	444	0.94
6	18	0.0019	0.17	13.1	0.6	2	23	454	475	453	475	0.94
7	18	8.6	7.5e+02	1.6	1.5	1	23	491	514	491	514	0.84
8	18	0.0041	0.36	12.0	1.7	1	23	523	546	523	546	0.94
9	18	8.9	7.8e+02	1.5	2.1	1	23	675	698	675	698	0.92
10	18	5.4e-05	0.0047	18.0	1.8	1	23	704	726	704	726	0.96
11	18	0.0011	0.099	13.8	1.9	1	23	733	755	733	755	0.98
12	18	9e-05	0.0079	17.3	2.3	1	23	760	782	760	782	0.96
13	18	0.00033	0.028	15.5	1.3	1	23	788	810	788	810	0.98
14	18	6e-05	0.0052	17.8	1.3	5	23	820	838	817	838	0.95
15	18	0.00058	0.051	14.7	2.6	2	23	845	866	845	866	0.98
16	18	0.00089	0.078	14.1	0.7	2	23	874	896	873	896	0.97
17	18	2.9e-05	0.0025	18.8	0.5	1	23	901	923	901	923	0.97
18	18	0.00052	0.045	14.9	1.1	2	23	930	952	929	952	0.96

Sequence Information

Coding Sequence: ATGTCTTCGGATGAGTCTGATGATGAACCGCTATCCGTTATAGCGGCAAATAAGAAAATAGACTCTGAAGAATATGAGGAGACATCATCATATTCATCATCATACTCCGACGAGTCGCCAGATAGGAAGAAAAAGAAGTTACCACCACCTAAGCGGTTTTCGGTCACAATAAAGCTTCAACGTAAGAAGGCTGCTGAGCAACCGCCGGTGATAGAGAGGCCGGCAGACGTGTGGCTGTACCTAAAAGAACTGAATCCTACGGGTCCCTACAGCTGCTTACTCTGCACAGACTGGTTCATAAACAGATCCAAAATGATTATTCATTACGTCTTAAATCATAAAAAAGACTTCTGTGGTATTTGTAGATACTTCGTATCTGATAGAGAGGTGTGGGCAAAACATTTGAAGTTTCATACTCCCTGGCCATGCTCACAATGTGTTGAGAACTTTGAAACGGAAACAGAGCTCCGGCTTCATCTCAAGTCTCATCACAATCTCGTGCACTGCAGACTGTGTCACTTCCGTGTACATGATGGTGATCTGTACCACTCACACTTGTTCCAAAAACACAATGTCTCCAATGTGTCCAATAAAGATGAGGAAACTCTTTGGGAGTTAGAATATGATGGCACTTCCAACTTCCTCTGTTTACTTTGTAATAAATCCTCCAACTCTTCTAGAACATTCTTCAATCATTACATGGGATATCACCACTTCACCATAAAATGCTTTACTGCTGTGTTGTCAGGCAGAGACATACCATTCTCAGTGTATGGTGCAGATCTCAGAGCTCAATTTGTTGAAGAACAATTAAAACACCATGAAAGATACGGCTATGTTGATTCTGAGTTCAAGCCTAATGACTGTGTTATAGTGGATGACACAAATCAAACTAGAGATTTACTAAAAGTTCTCATACCAGAAATAAAACGAGAGGTAGAAACCGCTGATGAAGCCAAGAATGACGATGGAACTGCAAAGAACAAGGAGGAAGACGTGTACAAAAACTACAATGGTATTGATGATTTCGATGTTACTTTAATGGAGCTGATAGTCGTCCAGAAATGTTATCATGATTACATCTCTGACGTATTATCAGAAATAAATGCTAATTCATTTTTTGAATACTCGGATGTTGACTATGAGAAGCTCACAACTGAAGTAGCCATGGATATAGTTTGTACACTGTGCAGTATCCGATACAGTACTTTGTCAAGTTTTGCCAATCACATGTTCAAAATGCATTGCATAAAGTCCTTGCCAATATTCTCATGCCGAGTGTGTGCGACTACTTTTGACACTCAAAATGATCTGGACACTCATGTATCAAATGAGTTGGGAGAATTTGAGGATCTGTGGATATGTCAGTTTTGTGATAAAGAGTTTGATGATAGGGAGAATACGAGGCGACATCTGACGGAACATTGGGAGCATGTAGAATATGACAACTGTTTCAGCCCACATCTAGGCTTTAAATGCCGGTATTGTCCTACACTGTTTTGGCATGAAACGGACAGAGAAACTCATCAGGTGCGGGCGCATTTCTTCAACCATAAAGATGCATATTATAAGTGTGAGAGCTGTAATGAAATGTTTAGTGATAAGGTCTGGTATGTCCACCACTACTTAGAGAAGCACAGCACCCCTGAAAATACAGCACTTTACCTCCTCAAATGTTCCCTCTGCTGTGTGGTATTGCCAAGTATCGAGGAGATGAGAGGGCACTTCAACCTTGAACACTCTGAAGCTAGAAAGGTGTTCTGTTCATTAGACTCCTGTCAGTACAAACCTTTGAGCCATCGGAAGTCTTTCAAGTTACATTTGCGGCTTCTACCCGTAATGGCAACAATGTCGTCTGCCTATCTAATCGGTTGCCCCACACTTCTTCTTCCAGTCCATGACGATGCACACAGCTCGCGGGGCACGGCCGGAGCCGTCGGTGGAGTGCGCGGTGTGCGGCCGCGAGTTCGGCAGCACGCGCGCGTGCGGGCGCACATGGCGCAGGCGCACGGGCCCGCCAAGTTCAAATGCAAGCTCTGCAGGGAGATCCTGCACACCACAGACGAGAGGAAACTCCACTACCTCATAAGTCACCCTGGCCAGCATCCGTTCGAGTGCTCGGAGTGTGGCAAGTCGTTCCAGTACAAGTCGTCGCTCTACATGCACAAGCAGGACCACGTGCCCAATAAGCAAAACTATACCTGTACCTTCTGCGGAAAGACATTCCTGAAACGCGACTCCTTCCGGGAACACGTTCAAATCCACGAGGGTCCGCGTCATGCGTGTTCGTACTGCCCGATGCGCTTCGTGCAACGATCTAACATGTTACGTCACGAGCGACGTCACACCGGCGAGCGTCCGTACGCCTGCCCGCACTGTCCGCGGAGCTTCGCTGATAAGGGAGCCTGTAACTCACACGCCAGGACCCATTTGAAAGACACGTCATATGGTTGTATTTACTGCGGCAAGACGTTCGCACAGAAGTCCAAGCTCACGTATCACACCAGGAAACATACTGGAGAAAACCTGGAAACGTGCACAGTATGCTCAAAGTTGTTCACAAGTGCGTGCTCGCTGCGAGAACATATGAAAATACACGAACCTAAGACGAATCTGGTCAAGTGTCCTCTATGTGATCGCAAATATCAAGATGAGCGCTACATGCTGCGTCACCTGCGCACCTCACACACACACGCGCGGCATCCTTGTCCGATCTGCAACAAGACGTTGACCAGCCCCGCCGGGCTGCGACACCATGTCATCACTCACAGCACACTGAAGACCATCAGTTGCAAAATGTGTCCAAAAGCATACTCAGAGAAAAGAACAATGATCAAACATTTACGCCGTCGACATGGCTTCAAAGGTACTGAACCAAACATCAAAGAGTTCTACTCTAGACTGGACCCTAGAGAGTGTAACCTAGGTCTCGACGAGCCGATCATGACCAGTATATTCGGACCTCCGCCAAAGAAGCCGAGGGATGAAGTCCTAATAGCAGATTACGTTACTGTAGCTAATATACAACCTGTAGAGGAGGGTAACGAAGAGAGCCAGAGTACAGAAGATACACAAGATTCGCTAATACTGAAGTCTCAGACAGACGATGGAGAGTCGACAGAGGGTGACAAGGAAAAGGATAGTCTTGTATCAACGGAAAAGCAAATTGAGATAAAGATTGAACCTAAAGAACCGTCTGAACGCAGCGGCGAGCTGGAACCTACTGACATTGTTAGCGTTAAGATTGAGCCATTGGATGATGAGCATGCTGGGCAGGAGTCGTAG
Protein Sequence: MSSDESDDEPLSVIAANKKIDSEEYEETSSYSSSYSDESPDRKKKKLPPPKRFSVTIKLQRKKAAEQPPVIERPADVWLYLKELNPTGPYSCLLCTDWFINRSKMIIHYVLNHKKDFCGICRYFVSDREVWAKHLKFHTPWPCSQCVENFETETELRLHLKSHHNLVHCRLCHFRVHDGDLYHSHLFQKHNVSNVSNKDEETLWELEYDGTSNFLCLLCNKSSNSSRTFFNHYMGYHHFTIKCFTAVLSGRDIPFSVYGADLRAQFVEEQLKHHERYGYVDSEFKPNDCVIVDDTNQTRDLLKVLIPEIKREVETADEAKNDDGTAKNKEEDVYKNYNGIDDFDVTLMELIVVQKCYHDYISDVLSEINANSFFEYSDVDYEKLTTEVAMDIVCTLCSIRYSTLSSFANHMFKMHCIKSLPIFSCRVCATTFDTQNDLDTHVSNELGEFEDLWICQFCDKEFDDRENTRRHLTEHWEHVEYDNCFSPHLGFKCRYCPTLFWHETDRETHQVRAHFFNHKDAYYKCESCNEMFSDKVWYVHHYLEKHSTPENTALYLLKCSLCCVVLPSIEEMRGHFNLEHSEARKVFCSLDSCQYKPLSHRKSFKLHLRLLPVMATMSSAYLIGCPTLLLPVHDDAHSSRGTAGAVGGVRGVRPRVRQHARVRAHMAQAHGPAKFKCKLCREILHTTDERKLHYLISHPGQHPFECSECGKSFQYKSSLYMHKQDHVPNKQNYTCTFCGKTFLKRDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRSFADKGACNSHARTHLKDTSYGCIYCGKTFAQKSKLTYHTRKHTGENLETCTVCSKLFTSACSLREHMKIHEPKTNLVKCPLCDRKYQDERYMLRHLRTSHTHARHPCPICNKTLTSPAGLRHHVITHSTLKTISCKMCPKAYSEKRTMIKHLRRRHGFKGTEPNIKEFYSRLDPRECNLGLDEPIMTSIFGPPPKKPRDEVLIADYVTVANIQPVEEGNEESQSTEDTQDSLILKSQTDDGESTEGDKEKDSLVSTEKQIEIKIEPKEPSERSGELEPTDIVSVKIEPLDDEHAGQES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00758517;
90% Identity: iTF_00300522;
80% Identity: -