Lwla011229.1
Basic Information
- Insect
- Lacanobia wlatinum
- Gene Symbol
- clz9
- Assembly
- GCA_947578705.1
- Location
- OX388035.1:8894153-8897044[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.7e-09 1.5e-06 28.4 0.0 1 39 14 52 14 57 0.90
Sequence Information
- Coding Sequence
- ATGCCACGTACTTATATAAGAAAGAAAATTAAATCATACACTCCACAGGATTTAACTCAAGCGATCACAAAAgtaaaaaatggagaacttacgcaatatagagcagcgcaacagtacaagattcccatgacgactcttcatgaacacttaaaacaaggtaaaaaacctaccagaccaaatgcaggtaggccaactgtaatagccttagaggatgagaaaaaattagcagaaactgtgagaattatggaaaaatggggatatggcctaactaggtttgaaattatggagcttgtcgctgagtatgtgcgggtgaataagattaaaacaccatttaaaaacaatgtgccaggcacagattggttcattaatttccggaaacgacatcgattatcaattaaaaaagcacagcctgtagaatttgttagaagaaaaatgacagatccattcgtcattggtgaatatttcgatttgctggaaaatactctcaaagatttggatctttttgaaagtccccaattcatttggaacttagatgagacatcattatgcctggatccatccagaacaaaagtagttggacaaataaacaaaccttgtgcgaggaccacccatgggagtggaaaagaaaatatcaccgttttgacaggcgcaagcgctagtggcaagaagttgccgcctttgattgtatttaaaggaaaatttgtttgggatcagtggatggctgaactggatggtggtgattacgatttcgaattatcgtatgcagccagtactaaggggtggatggaaacagacattttctataattatatggaaaaagttcttatcccaagtctgggcgaagagcgcccggttcttattatttatgatggtcactcaactcacgtcgatgttagagttgtggagctggcaatccggaaccatgtcacaatacttaaactaccgccacacacatcacatttgctgcagcctcttgatatagcagtattcaagtcgttcaagtcaatatgggatgccaagctggtagagtggcagcgtagaaatgttggcacgaaaatgccaaaaaaagttttcgctcaagcgctggcagatacttggcaagaaacaaaccccgaaataatcaaaagtggatttagaaaagctgggattttccctttcaaTTCGCACGTGATACCTGTGGACAAGTATGATCCAGATGCATACAAAAGATACCAAAAAAATATATCAGAAAAACATTTTGCATTCACAAAACCAACACCCGAAAATCCGAAGTCACTGAAAGGAATTTGTATTGGTTTCTTTAACAATCAACTTTCGACCACTAATGATACTCTTGAAAATGCAAACACTGATAACGATACCTTACTGTTGCAAGTTTCAAAGCCCAGTATACAAACTTTGAATTTTGTGGCCAAACAGCCAACCCAACTACCTATTTGTTTACAGAAATCGTCAAACACTGAGGAGATTACCTTGCTTTCTCAGGTATCAAAATCTGATATCCAGACGTCGAGTTTTGTGGCAAAACAACCATCCCAAATACCTATATGTTTACAGAAATCTTCAAACACTGAGGAGATTACCTTGCTTTCTCAGGTATCAAAATCTGATATCCAGACGTCGAGTTTTGTGGCAAAAGAGCCATCCCAAATACCTATATGTTTACAGAATTTTAATCAAACACCAACTCAAAATTTGTCAAAAATAAAAATAATCTCGAACGTTATCATAAAAAAAGCACCTCAACAGTTCCTTCAAGCCCAACCTCAACAGTTCGTTCAAGCCCAATCTCTACCCGAGCCATCATGCACATTCGAAGAAATGCTTTTAAGAAAAATACAACAGGACAAAAAAGATAATCAACCGACAAAAAAGAAACGTGTCACGAAAGGTGCTGAAGTGATAACTGCAAAAATGGGTAAAAAAAATTTAGAAGAAACGAAAAAAGCTCAAAGTTTGAAAGCGATAGCAAAAACCAGTAAAATTAACAAAAAAAAAACAGCAAGAGTAAAAAAAGAGGAAGATTCTGAAATAACAGTATTTAGAACAAAACAACAAGAACAGCCAGGCCCTTCAGGCACAAGAAATAAGAAAAAACGAAAACGCCAACTTTCACTTGACAGCATAACTAGTGTATCCGACATCATGAGCGAACATAGTGATACTGATATTGAATGTGTTGATTTAGAAGAATTGACGGATGAATACTCTGAAAATGATTTTCAAATATGTAACGAAGAACTAAGGTTACAAAAAAAAACAAATGATGATATTTATGGTAAAAAAAATAAAAATAGTGAAAGTTTTACTGTCGAAAATGTACTCTCTAACAAGAGTTCAAACTCTCTCTGTAATAAGGGTAAAGGGATAGGAAAAAAAAGCAAAGGCAAAGAAAACAAAGTAGACGAAAAAGTCAAAGAAAATGAAGAGGAAAGACTTATTGAAAGAAATTACGAATACGATATTGATGTTTTTACTAAAGAAAAAAATATAACAACTAGAGAAGACTACTATGAAGAAAAAGACAAAGGTGGACAACTGCTACTTAAACAGGAAAGTAAAGAAATAGTATACGAAACTCAAGAAGAGAACCTTGCTATGAAGGAAAATTATCAATTAAATGATTCAGTACTCGTCAGATATTTGATAAGAAAAAAATGGAAGTATTATGTGGGGTTCATAGAAAAAATTATAAAAAAAGAAGAAAATATATACTACAGTATCATTTTTTTAAAAACCATAAGACCACAGCAGCGCCTTACCTTTATAACGACCAAAAGAAAAGATATTGATGAAGTTCCAGACTCATTAATAGTGAAGAAGATAGATTTAAAAAGAAACGATAAAGAATATTACTTATATAATAACGACGATAACATTTATTTTAACTAA
- Protein Sequence
- MPRTYIRKKIKSYTPQDLTQAITKVKNGELTQYRAAQQYKIPMTTLHEHLKQGKKPTRPNAGRPTVIALEDEKKLAETVRIMEKWGYGLTRFEIMELVAEYVRVNKIKTPFKNNVPGTDWFINFRKRHRLSIKKAQPVEFVRRKMTDPFVIGEYFDLLENTLKDLDLFESPQFIWNLDETSLCLDPSRTKVVGQINKPCARTTHGSGKENITVLTGASASGKKLPPLIVFKGKFVWDQWMAELDGGDYDFELSYAASTKGWMETDIFYNYMEKVLIPSLGEERPVLIIYDGHSTHVDVRVVELAIRNHVTILKLPPHTSHLLQPLDIAVFKSFKSIWDAKLVEWQRRNVGTKMPKKVFAQALADTWQETNPEIIKSGFRKAGIFPFNSHVIPVDKYDPDAYKRYQKNISEKHFAFTKPTPENPKSLKGICIGFFNNQLSTTNDTLENANTDNDTLLLQVSKPSIQTLNFVAKQPTQLPICLQKSSNTEEITLLSQVSKSDIQTSSFVAKQPSQIPICLQKSSNTEEITLLSQVSKSDIQTSSFVAKEPSQIPICLQNFNQTPTQNLSKIKIISNVIIKKAPQQFLQAQPQQFVQAQSLPEPSCTFEEMLLRKIQQDKKDNQPTKKKRVTKGAEVITAKMGKKNLEETKKAQSLKAIAKTSKINKKKTARVKKEEDSEITVFRTKQQEQPGPSGTRNKKKRKRQLSLDSITSVSDIMSEHSDTDIECVDLEELTDEYSENDFQICNEELRLQKKTNDDIYGKKNKNSESFTVENVLSNKSSNSLCNKGKGIGKKSKGKENKVDEKVKENEEERLIERNYEYDIDVFTKEKNITTREDYYEEKDKGGQLLLKQESKEIVYETQEENLAMKENYQLNDSVLVRYLIRKKWKYYVGFIEKIIKKEENIYYSIIFLKTIRPQQRLTFITTKRKDIDEVPDSLIVKKIDLKRNDKEYYLYNNDDNIYFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00038664;
- 90% Identity
- iTF_00851721;
- 80% Identity
- -