Basic Information

Insect: Lacanobia oleracea
Gene Symbol: Znf296
Assembly: GCA_950371165.1
Location: OX493385.1:14463764-14491109[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.26 34 6.6 2.1 1 21 112 132 112 133 0.95

2 12 0.00044 0.059 15.3 0.6 2 20 146 164 145 168 0.95

3 12 0.00064 0.085 14.8 1.2 2 23 208 229 207 229 0.96

4 12 0.0098 1.3 11.0 0.3 1 20 333 352 333 354 0.92

5 12 3.6e-05 0.0049 18.7 0.8 1 23 362 385 362 385 0.98

6 12 5.8e-05 0.0078 18.0 2.4 1 23 406 428 406 428 0.98

7 12 6e-06 0.00081 21.1 3.8 1 23 435 457 435 457 0.99

8 12 1.2e-07 1.7e-05 26.4 2.3 3 23 471 491 469 491 0.96

9 12 2.9e-05 0.0038 19.0 3.2 1 23 497 519 497 519 0.99

10 12 1.6e-06 0.00021 23.0 2.5 2 23 526 547 525 547 0.96

11 12 1.5e-07 2e-05 26.2 1.4 1 23 553 575 553 575 0.99

12 12 0.0035 0.47 12.4 0.1 1 23 581 603 581 603 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.26	34	6.6	2.1	1	21	112	132	112	133	0.95
2	12	0.00044	0.059	15.3	0.6	2	20	146	164	145	168	0.95
3	12	0.00064	0.085	14.8	1.2	2	23	208	229	207	229	0.96
4	12	0.0098	1.3	11.0	0.3	1	20	333	352	333	354	0.92
5	12	3.6e-05	0.0049	18.7	0.8	1	23	362	385	362	385	0.98
6	12	5.8e-05	0.0078	18.0	2.4	1	23	406	428	406	428	0.98
7	12	6e-06	0.00081	21.1	3.8	1	23	435	457	435	457	0.99
8	12	1.2e-07	1.7e-05	26.4	2.3	3	23	471	491	469	491	0.96
9	12	2.9e-05	0.0038	19.0	3.2	1	23	497	519	497	519	0.99
10	12	1.6e-06	0.00021	23.0	2.5	2	23	526	547	525	547	0.96
11	12	1.5e-07	2e-05	26.2	1.4	1	23	553	575	553	575	0.99
12	12	0.0035	0.47	12.4	0.1	1	23	581	603	581	603	0.97

Sequence Information

Coding Sequence: ATGGAAGATCAGATAAGCAAAAATGATGGTTTACCTTCAACAATTTGCTGCGAGTGTAAAGAAAAAGCATCAAAGGCATATGAATTTAAGAAAAAATCGGAAGAAGCTAATATGTCCCTTAGAGggctattaaaaaaagaaaagaaagaaagtgcGTCAATGAAAACTGTAAATCAAACTAATCCATCAGATGTGAAGACTGAAGATTGGTCACAACTTGACAATTATGAGTATACAGATAGTGATTTCAATGTTTCCCTAAGCAGTGGGCCAGATTTACATGAACAGGAAGCTGTTAAAATTGAGCATGAGAGCCTAGAACGCAAGTCATGTTTTGTTTGCAAAAGCTGCTTAGTCGTTTTCGATACTCACTGTAAATTACAAGAACACCAGAAAATATGCATCAAAGTAGAGTGTGAAGAAACCAACCGCACTTACTGCCCACTTTGCGGTACATGCTACAATGGTGCAGAGAATTTAACTAAACATATGTGGGAAAACCATGCAGACCTTATGGGCCCAAAAAAGAGGGGCAGACCTAAGAAGATGTTAACCAGTACTATACTCAACAAGTTATCAGAAAATGGATTTTGCATAACATCAATGCCAGCTAAAAAGATTGAGTGTGAATTTTGCAAGCAACATTTCGAAACCAAAGAAGAATTAAGATCACACGCTATAACTCATAAAGATACGAAAGTGCTACGTTGTCTAAAATGCAAGAATATTTACCTCGATAGGAAAAAGTTTGACCATCATAGTTGTATTAACGAGAAAGCTGGTTTAAGCAATGTAGAAAATGACCCGACTAAAGCAGAAACCAACGAAAAAAATCCACAGAATTTACATTCAGAAATTACACTGCGAGAATTTTTAGACCCAAATATGGATATgGAGACCATCAACATGCTTATAGTATGTAGTGCTTGTAGCTGCTTATTGCAATCGGAAGCCGATCTCATCAACCATCGTGATGCTGAACACCCGGAGCTTTCTCACCGGTGCAATCTCTGTACTAAGGTGTTTGCAAGCTTGCGATCAGCGGCCCGCCATAGGAGCATTTGTAAGCaaatagaaagaaaatataaatgtaaCACGTGTGGTCTGAAATTCGCATATGAAATATCATtgaataaacatattttaagaTATCATGAGGGACAAAGTGTTTCAGTTAAATTTATTGACTCGAAAACCAAACGAGAAGAGCGACAGTTTCAGTGTGATACTTGCAATAGAAGTTTCTTCAAgaGAGACTTGCTCGTCAAACATACTAAAATACACATGCCAATCGAAAACTTTTTTCAATGCGATGTTTGTGAAAAGAAATTTCACAGGAGTGACAATCTTCGTTCTCACAAACGAGTCCATCAGCCGCAGCGCGAAAAGACTTCGTCTAGTAATTGCTTATGCCTTTACTGCGGCCGCAGTTTCTCTAACTCGTCGAACTTAATCGTTCACATGCGACGCCACACCGGAGAGAAGCCCTACAAATGTGATTTTTGTGGCAAAGGTTTTCCAAGGTCTTCCGATCTTCAATGTCACAGAAGGTCTCATACCGGAGAGAAACCTTGTGTATGCCGTGTTTGTGgtaaaggTTTTTCGCGCAGCAATAAGTTGTCCCGCCACATGCGCGTTCACACTGGCCAGCGGCCGTACAAGTGCACGTACTGTGAAAAGGCGTTCTCGCAGAGCAATGACCTCAACCTGCACATACGCCGACATACTGGCGACCGGCCCTACATCTGCGAAGTTTGCGGCGACAGATTCATACAGggtACTGCATTACAGAATCACAGAAGGGCTCACGGTCACTTTCCTGCTCCTCCCGCAGATGCACCTTCCGAGGTGCAAACActaacttttacagtacagagtATGAGCCATAACAATAGTCACTAA
Protein Sequence: MEDQISKNDGLPSTICCECKEKASKAYEFKKKSEEANMSLRGLLKKEKKESASMKTVNQTNPSDVKTEDWSQLDNYEYTDSDFNVSLSSGPDLHEQEAVKIEHESLERKSCFVCKSCLVVFDTHCKLQEHQKICIKVECEETNRTYCPLCGTCYNGAENLTKHMWENHADLMGPKKRGRPKKMLTSTILNKLSENGFCITSMPAKKIECEFCKQHFETKEELRSHAITHKDTKVLRCLKCKNIYLDRKKFDHHSCINEKAGLSNVENDPTKAETNEKNPQNLHSEITLREFLDPNMDMETINMLIVCSACSCLLQSEADLINHRDAEHPELSHRCNLCTKVFASLRSAARHRSICKQIERKYKCNTCGLKFAYEISLNKHILRYHEGQSVSVKFIDSKTKREERQFQCDTCNRSFFKRDLLVKHTKIHMPIENFFQCDVCEKKFHRSDNLRSHKRVHQPQREKTSSSNCLCLYCGRSFSNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCVCRVCGKGFSRSNKLSRHMRVHTGQRPYKCTYCEKAFSQSNDLNLHIRRHTGDRPYICEVCGDRFIQGTALQNHRRAHGHFPAPPADAPSEVQTLTFTVQSMSHNNSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00072259;
90% Identity: iTF_00449489;
80% Identity: -