Lole006965.1
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- -
- Assembly
- GCA_950371165.1
- Location
- OX493387.1:22736944-22738020[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.6e-09 0.00012 23.0 3.9 48 196 74 218 53 240 0.71
Sequence Information
- Coding Sequence
- ATGTTATCCTGTGTGGCTTGTAACACGGATATTACAGACAATAACTTTATAAAATGTGTATGTTGCAATAAAAACTACCATATGCTTTGTATTAACTTCTCGCATGGAAACACACAGGATCAAGAACCTGCGATTAACTGGGTATGCCCACAATGTCTGAGTAAACAGCCAAAGAGCGATAATTCCAATTTACCCGTGCGCCCATCCACGCCTACATCCATGGCTGACATGACCTTTAATGTCACGCGTCGTAAGATTACCCAAATTAGACCTAATGCCCTGCAATCATCGAGTCAACCAACAGAATCCCTGCGCTCAGAGATAAGAGATATCATACGTGAAGAAATGCGTAATGCGCTGCAGGACACTATAAGCGAGTTTAAAGTTTCAATTTCTACTAACTTAAGGGAAATCAATGATCACATAACGGCTTTTAAGGATTCTATGAATTTCTTAAGTGAAGAGTTTGACCAATTAAAGCGTGATAACGTTATATATCGCAATGAAATTAACCAATTGAGGAAGGAGAATGAGATATTACACCAGGAAATGTCCGAGATTAAGGGAAAATTCATACAAATTGATCAACTGTCGCGGGCctctaacattgaaatacagTGCGTCCCGGAACATAAATCGGAAAACGTTATAAACATCGTTAAGCAAATTGGTCGAACGGTGAGCGTATCGATTAACGACAATGAAATACATTATTGTGCAAGAATTGCGAAATTGAATCCGGATAGTACCCGTCCACGGTCCATACTTACCAAATTTAATTCGCCCCGTACCCGTGACTCATTTCTATCTGCTGTCCTgacatataataaaaagaatGTTCAAGACAAATTAAACACCCATGACCTGGGATTGGGAACAAGTCAAAAAATCCCTGTGTATGTCGTTGAGAACCTATCGCCGGAAAATAAACACTTTCATGCTGCAACTCGTAAACGGGCAAAGGAGCTAAAATACACGTTTGTGTGGGTGCGTGGAGGACGCATCTTTGTGAGAAAGTCTGAAACTACGGATTCAATATTTATCCGTAACCTTGATATGTTACGTAAACTCACTTAA
- Protein Sequence
- MLSCVACNTDITDNNFIKCVCCNKNYHMLCINFSHGNTQDQEPAINWVCPQCLSKQPKSDNSNLPVRPSTPTSMADMTFNVTRRKITQIRPNALQSSSQPTESLRSEIRDIIREEMRNALQDTISEFKVSISTNLREINDHITAFKDSMNFLSEEFDQLKRDNVIYRNEINQLRKENEILHQEMSEIKGKFIQIDQLSRASNIEIQCVPEHKSENVINIVKQIGRTVSVSINDNEIHYCARIAKLNPDSTRPRSILTKFNSPRTRDSFLSAVLTYNKKNVQDKLNTHDLGLGTSQKIPVYVVENLSPENKHFHAATRKRAKELKYTFVWVRGGRIFVRKSETTDSIFIRNLDMLRKLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00111686;
- 90% Identity
- iTF_01063783;
- 80% Identity
- -