Lole010300.1
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- -
- Assembly
- GCA_950371165.1
- Location
- OX493389.1:23932239-23935623[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.00014 1.7 9.6 0.0 6 40 132 166 127 176 0.89 2 6 0.00014 1.7 9.6 0.0 6 40 236 270 231 280 0.89 3 6 0.00014 1.7 9.6 0.0 6 40 340 374 335 384 0.89 4 6 0.00014 1.7 9.6 0.0 6 40 444 478 439 488 0.89 5 6 0.00014 1.7 9.6 0.0 6 40 548 582 543 592 0.89 6 6 6.1e-05 0.77 10.8 0.0 6 42 652 688 647 690 0.89
Sequence Information
- Coding Sequence
- ATGCCACAACTGGAGGCGTTGGAGGCTCGCGCGCTGGCGCTACACAAGCGGCGCTGCGAGTTCCTCGTGGAGCGACGCCGCGCCGACCTGCGCGACCAGGCGCAGGACGTGCTCGCTCCGGCTGGTCGAGCCTCAAAGCCAGCCGACAGCGAAGAGAAGACGCGGCGCGCCGCCGAGCGCGAGGGCCGCCGGCGAGCGCGCCGCCTCAGGCGCGAGGCgctggccgccgccgccggcgccgcgctgCCGCACCGCGACGGAGACTCCTCGGACGACGAGCTGCCTCCGCACGAGATGCACCACTACACGCAGGAGAGAGACGCTATCCGTCAACAATCCGCGTCGTTGTTCAGCGACGCGCTGCCCGCGTGGCGCAGCGTGTCAGGAGTATGCGGGCGCCTCGCACGCTGGCGAGCGCGCGCCACGTCTCTGTATACGGACGCCTACGTGGCCGACTGCCTGCCCAAGCTGCTTGCGCCCTACGTCAGGCACGAGCGACGCGCTGCCCGCGTGGCGCAGCGTGTCAGGAGTATGCGGGCGCCTCGCACGCTGGCGAGCGCGCGCCACGTCTCTGTATACGGACGCCTACGTGGCCGACTGCCTGCCCAAGCTGCTTGCGCCCTACGTCAGGCACGAGGTAACATCGAGCACATAATATTGTTCAGCGACGCGCTGCCCGCGTGGCGCAGCGTGTCAGGAGTATGCGGGCGCCTCGCACGCTGGCGAGCGCGCGCCACGTCTCTGTATACGGACGCCTACGTGGCCGACTGCCTGCCCAAGCTGCTTGCGCCCTACGTCAGGCACGAGCGACGCGCTGCCCGCGTGGCGCAGCGTGTCAGGAGTATGCGGGCGCCTCGCACGCTGGCGAGCGCGCGCCACGTCTCTGTATACGGACGCCTACGTGGCCGACTGCCTGCCCAAGCTGCTTGCGCCCTACGTCAGGCACGAGGTAACATCGAGCACATAATATTGTTCAGCGACGCGCTGCCCGCGTGGCGCAGCGTGTCAGGAGTATGCGGGCGCCTCGCACGCTGGCGAGCGCGCGCCACGTCTCTGTATACGGACGCCTACGTGGCCGACTGCCTGCCCAAGCTGCTTGCGCCCTACGTCAGGCACGAGCGACGCGCTGCCCGCGTGGCGCAGCGTGTCAGGAGTATGCGGGCGCCTCGCACGCTGGCGAGCGCGCGCCACGTCTCTGTATACGGACGCCTACGTGGCCGACTGCCTGCCCAAGCTGCTTGCGCCCTACGTCAGGCACGAGGTAACATCGAGCACATAATATTGTTCAGCGACGCGCTGCCCGCGTGGCGCAGCGTGTCAGGAGTATGCGGGCGCCTCGCACGCTGGCGAGCGCGCGCCACGTCTCTGTATACGGACGCCTACGTGGCCGACTGCCTGCCCAAGCTGCTTGCGCCCTACGTCAGGCACGAGCGACGCGCTGCCCGCGTGGCGCAGCGTGTCAGGAGTATGCGGGCGCCTCGCACGCTGGCGAGCGCGCGCCACGTCTCTGTATACGGACGCCTACGTGGCCGACTGCCTGCCCAAGCTGCTTGCGCCCTACGTCAGGCACGAGGTAACATCGAGCACATAATATTGTTCAGCGACGCGCTGCCCGCGTGGCGCAGCGTGTCAGGAGTATGCGGGCGCCTCGCACGCTGGCGAGCGCGCGCCACGTCTCTGTATACGGACGCCTACGTGGCCGACTGCCTGCCCAAGCTGCTTGCGCCCTACGTCAGGCACGAGCGACGCGCTGCCCGCGTGGCGCAGCGTGTCAGGAGTATGCGGGCGCCTCGCACGCTGGCGAGCGCGCGCCACGTCTCTGTATACGGACGCCTACGTGGCCGACTGCCTGCCCAAGCTGCTTGCGCCCTACGTCAGGCACGAGGTAACATCGAGCACATAATATTGTTCAGCGACGCGCTGCCCGCGTGGCGCAGCGTGTCAGGAGTATGCGGGCGCCTCGCACGCTGGCGAGCGCGCGCCACGTCTCTGTATACGGACGCCTACGTGGCCGACTGCCTGCCCAAGCTGCTTGCGCCCTACGTCAGGCACGAGGTAACATCGAGCACATAA
- Protein Sequence
- MPQLEALEARALALHKRRCEFLVERRRADLRDQAQDVLAPAGRASKPADSEEKTRRAAEREGRRRARRLRREALAAAAGAALPHRDGDSSDDELPPHEMHHYTQERDAIRQQSASLFSDALPAWRSVSGVCGRLARWRARATSLYTDAYVADCLPKLLAPYVRHERRAARVAQRVRSMRAPRTLASARHVSVYGRLRGRLPAQAACALRQARGNIEHIILFSDALPAWRSVSGVCGRLARWRARATSLYTDAYVADCLPKLLAPYVRHERRAARVAQRVRSMRAPRTLASARHVSVYGRLRGRLPAQAACALRQARGNIEHIILFSDALPAWRSVSGVCGRLARWRARATSLYTDAYVADCLPKLLAPYVRHERRAARVAQRVRSMRAPRTLASARHVSVYGRLRGRLPAQAACALRQARGNIEHIILFSDALPAWRSVSGVCGRLARWRARATSLYTDAYVADCLPKLLAPYVRHERRAARVAQRVRSMRAPRTLASARHVSVYGRLRGRLPAQAACALRQARGNIEHIILFSDALPAWRSVSGVCGRLARWRARATSLYTDAYVADCLPKLLAPYVRHERRAARVAQRVRSMRAPRTLASARHVSVYGRLRGRLPAQAACALRQARGNIEHIILFSDALPAWRSVSGVCGRLARWRARATSLYTDAYVADCLPKLLAPYVRHEVTSST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -