Lole014653.1
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- -
- Assembly
- GCA_950371165.1
- Location
- OX493392.1:19910389-19912608[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-07 6.2e-05 24.1 0.0 2 36 19 53 18 61 0.89
Sequence Information
- Coding Sequence
- ATGCCGCGTATATACAAACCTGATCCTAGGGGGAAAACGTATAGAAAGTACGATGAAAACATTATAAATGAAGCTGTTGCCGCATATGCGAATGGCAAGTTCTCTTTAAAGGAGATAGCTGAGAAATATGATATCGATAAATCTGTACTTTATAGACACAGTGtcaaaactatgaaaaaacAAGGAGGGCAAACTATTTTAACAAACGAAACTGAAGAGTGGATGATAAAGTATATTAATATATGTGCGGAATGGGGATGCCCTTTAGATGCATTGGATTTGAGGTATATTGTTAAGGCTTATCTTGACCAAGTAGGCCGGACAgtgctaaaatttaaaaataatttaccggGACCCGATTTCGTCGCGGGTTTTCTAAAACGTCATAAAAACCAAATTTCCCAAAGATACAGTCAAAACATTAAGAAAAAAAGGGCAGAAGTTTCACCAAATACGATCAAAGAGTATTTCAAGGAGTTAGGAGAGTCATTGACAGGCATAAATCCGAGCAATATAATAAACTACGATGAAACGAATTTGACCGACGACCCAGGAcgcaaaaaaatcataactaaACGAGGATCGAAGTATCCAGAGAGGGTAATGAATAGTTCAAAGTCTTCAACTTCATTGATGATAGCCGCTACAGCCGACGGCGTTTTACTGCCACCGTATGTGGTGTACAAGGCTCTGAATTTGTATGATACATGGACTCGAAACGGACCACCAGGAGCAAGATATAATCGCACGCAATCCGGTTGGTTTGATGCAACTATATTTGAAGATTGGATTAAGACGATCATTATACCTCATTTCAAAGATAAAGTTGGAGAAAAAGTCCTAATAGGCGATAACCTATCATCGCATTTATCTATGGAGACAATAAAACTGTGCCACGAGCAAAATATATCGTTCGTTTTTTTACCGGCGAATAGCACACATCTGACGCAGCCTCTCGATGTGGCTTTCTTCAGACCTATGAAGATAGCATGGCGAAACGtagtattaaaatggaaaaaaaccgACGGAAAAAACCAAGCGACGATTCCAAAGGGATGTTTCCCAAAACTTTTATGTAAGTTAATGAAAGAGCTTAGTGACAACAGTAAGACTAATATAATGGCAGGATTCAAGAAAACAGGAATATATCCGATTAATGAAGAAGAGGTTTTAAGCAGACTACCTGAAGtgcaaaacaatgaaaataaatctataatAGAAAAATCCGTTCTAGATCTTCTAAAGGAGATGAGATATGGAACCATGAAGCCAACCACCGAAccaaaaaggaaaaagaaattGGAAATAATACCTGGACGAAGCGTTGGTACTGAGAGTGAAGACTACATAGAAACAGAAGAAGAGGAAAGCCAACAGATAACAAAAAAGAGAAGACTACTGTCAtccaaaataacacaaaacaacaaagaaaataCTACAACGAATACTTACGATGGCAAAGAAAAGAATAAATATAAGGGAAAAGGTAtagggaaaaaaactaaaacacaagaTCAGAATAttgctgaaaaggaaaatatacaGAAAAACGATCAAgacactgaaaaaatattacttaacacAATAAATGACTTTGATTTTATAGCAAACAATTCCATAGAAAGAATGCCTATTGTATTTGAAGACATGTTAGTATGTGGAAAtgaaattgttataaataacatacaaacaaacgagTTGCAGAATAATACCGGAATTGAAAGGATTGCTTTAAATGACATACAAATAAACGAGATGCAGAATGATACCGAAGAAGAAATGATTACTATAAATGACGTACAACTAAACGAGATGCAGTATAATACCGAAGAAGAAATGATTACTCTAAATGACATACAACTAAACGAGATGCAGAATGATACCGAAGAACAAATGATTGCTATAAATGACATACAACTAAACGAGATGCAGAATGATACCGGAGTAGAAATgacttataaacaaaataatgcaaccgaaaaaaataaaagaaaactgaaaattaTATCGAATGAAAAGGTATCAGATATTACTAAGATGAAAAAAGTTTCTTTGAATAAgtgcaaaaaaataagtaaaaattcgcgtcttaaaattttaaaagataaaattgaTAACATAAGTCGTCCTGGTCCAAGCGGTTTACAAACTCGGCGAACATCGTATTACAAAAGCGATAATGATATTCTGAAAGATTTAATGGACAGCGATGATGAATAA
- Protein Sequence
- MPRIYKPDPRGKTYRKYDENIINEAVAAYANGKFSLKEIAEKYDIDKSVLYRHSVKTMKKQGGQTILTNETEEWMIKYINICAEWGCPLDALDLRYIVKAYLDQVGRTVLKFKNNLPGPDFVAGFLKRHKNQISQRYSQNIKKKRAEVSPNTIKEYFKELGESLTGINPSNIINYDETNLTDDPGRKKIITKRGSKYPERVMNSSKSSTSLMIAATADGVLLPPYVVYKALNLYDTWTRNGPPGARYNRTQSGWFDATIFEDWIKTIIIPHFKDKVGEKVLIGDNLSSHLSMETIKLCHEQNISFVFLPANSTHLTQPLDVAFFRPMKIAWRNVVLKWKKTDGKNQATIPKGCFPKLLCKLMKELSDNSKTNIMAGFKKTGIYPINEEEVLSRLPEVQNNENKSIIEKSVLDLLKEMRYGTMKPTTEPKRKKKLEIIPGRSVGTESEDYIETEEEESQQITKKRRLLSSKITQNNKENTTTNTYDGKEKNKYKGKGIGKKTKTQDQNIAEKENIQKNDQDTEKILLNTINDFDFIANNSIERMPIVFEDMLVCGNEIVINNIQTNELQNNTGIERIALNDIQINEMQNDTEEEMITINDVQLNEMQYNTEEEMITLNDIQLNEMQNDTEEQMIAINDIQLNEMQNDTGVEMTYKQNNATEKNKRKLKIISNEKVSDITKMKKVSLNKCKKISKNSRLKILKDKIDNISRPGPSGLQTRRTSYYKSDNDILKDLMDSDDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00037748; iTF_00172833; iTF_00302049; iTF_00850625; iTF_00172834; iTF_00302050; iTF_00034659; iTF_00172835; iTF_00172836; iTF_00172837; iTF_00850629; iTF_00172838; iTF_00850663; iTF_00928615; iTF_01082377; iTF_01082378; iTF_01082379; iTF_01082380; iTF_00172814; iTF_00850671; iTF_00850672; iTF_00850673; iTF_00851730; iTF_00123315; iTF_00850675; iTF_00851731; iTF_00000276; iTF_00850676; iTF_00851732; iTF_00000277; iTF_00123317; iTF_00172821; iTF_00851733; iTF_00000278; iTF_00172822; iTF_00851734; iTF_00000279; iTF_00172823; iTF_00851735; iTF_00172824; iTF_00851736; iTF_00172825; iTF_00851737; iTF_00172826; iTF_00172827; iTF_01093979; iTF_00172828; iTF_00301116; iTF_00363964; iTF_00172829; iTF_00301117; iTF_00172830; iTF_00374014; iTF_00001119; iTF_00172831; iTF_00850623; iTF_00001120; iTF_00172832; iTF_00850624;
- 90% Identity
- iTF_00000276;
- 80% Identity
- -