Lole028573.1
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- -
- Assembly
- GCA_950371165.1
- Location
- OX493402.1:7176820-7178658[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.8e-09 1.7e-06 29.0 0.1 1 43 21 63 21 65 0.90
Sequence Information
- Coding Sequence
- ATGTACCTGTTTGTTTTAGAAATGGCGCCATACATTCGTAAAACGACAAGGCAAAGTTGGGATGAAACAAATATGAGAGACGCAATTGCAGCCGTTCGAAGCCAAAGAATGGGTTGGCAAATGGCAGCAAAGACATACCACGTTCCCGCTACTACGCTCCGACGTCGAGCAGAAAAAGGAGAAACGTCTAAAGGATATTTAGGTGGTCATAAAACTACATTTAATACAGAACTCGAAAGAGAAATTATTGCGCATTTACAAGAGCTGGAGGTGCGTTTTTTTGGAATGACAAGGACTGATTTGAGAAAACTTGCTTATCAAATTGCTGTTGCTAAGAAACTTCCCCATAGATTTTCTTCGGAAAATGAAATGGCAGGTTTGGACTGGCTGCGAGGCTTTAGGAAACGTAATCCGTCCATATCACTTCGAATACCTGAAGCCACATCGGCAGCCAGAGCTCGGGGATTCAACAAAGTCCaggtaaaaacattttttaaattgttggtTGATGTAATGGAACTGCACAACTTTGAACCCCATCAAATTTGGAATGTGGACGAATCTGGGTTTAGCACAGTGCCATCACAAAACCCGAAAGTCTTTGCGACAAAAGGTAGAAAACAAGTTGGGGTGTTAACCAGTGCTGAAAGAGGCCAACATTATACTACGGTTTGCTGCGTTAATGCCCTGGGAAGCTTCATACCTCCAGCATTCATTTTCCCTCGCAAAAATATGAAAGCAGAACTTATGGACCACGCGCCTACCGGCGCTGTTGGGTTTGCCCAAGAAAAAGGATGGATGAATGGGGAGGTATTCCTTAAGTGGTTGCAGCATTTTGCTAAACACGCAAAGCCGTCAAAAGAAGCCAAGATTCTGTTACTTTTAGATGGACACTCCAGTCACAAAAACTTGGAGGTATTGACGTACGCAAAAGATAACGGAATCATCCTATTCTGTTTCCCCCCACATTGCACACATAAAATGCAACCACTTGACGTTAGCTTCTTTGGCCCACTTAATACATTCTACAATCAAGAGCTGCATATTTGGTTGAGGAACCATCCAGGACGAACTGTTACGCATTTCCAGGTGGCTGAGCTGTTCAAGCAAGCTTATCTTCGAGCAGCTACGGTTAGCAATGGTCAAAATGGGTTTGCTGCAAGTGGCATTTACCCACTGAATGAGAATATTTTCCCTGACTGGATGTTTGCGCCTGCAGATGTTACTGACAATGTTCTTGGAGATTCTTCCGTTCCTATCTTGCCAGACAATGCCAGCAATCAAGAGTCTCAGGATCTCCAGCTGACCAAACACGGCGAGGCGCCACTTTTAGATGCCCAGACATCGCGCCCAAACGATCAAACTGAGGAAGAGCCTCCAGTACCTCAGTTAAATGACGACACTATTGCGGGGCCTTCAGTGCCTACTAGCTCCCACGATCAAATTCAGTCAAGTTTAACAATAGCAGATATTTCACCTTTGCCTAAATCTTCACAAATAAAACGATCTGTTCATAAGAAAGGTAAATTCGGGATGCTGAATGCATCACCAGACATAGCATTACTAAAAGCTGCCGTTGCTGAAAAAGAAGTAGCCAATATGAGAAAATCTGCCCGACAAGTTAAGAAAAGAATCGTGTTGGGAGTTTCCAGTGATGAGGAAGAACCGGTCGCCTCAGACGATGAAGACCCCCCCTGCATATATTGCAATGAGCCCTGGAGTCATTCTCGCTCCAGGGAATGGTGGCTTCAATGTCAAGTTTGTCGCCAGTGGTGTCACGCAGAATGCATTGGGTTACCAAAAACGGCTAAAAATGTAATCTGCGATGTTTGCAAATAG
- Protein Sequence
- MYLFVLEMAPYIRKTTRQSWDETNMRDAIAAVRSQRMGWQMAAKTYHVPATTLRRRAEKGETSKGYLGGHKTTFNTELEREIIAHLQELEVRFFGMTRTDLRKLAYQIAVAKKLPHRFSSENEMAGLDWLRGFRKRNPSISLRIPEATSAARARGFNKVQVKTFFKLLVDVMELHNFEPHQIWNVDESGFSTVPSQNPKVFATKGRKQVGVLTSAERGQHYTTVCCVNALGSFIPPAFIFPRKNMKAELMDHAPTGAVGFAQEKGWMNGEVFLKWLQHFAKHAKPSKEAKILLLLDGHSSHKNLEVLTYAKDNGIILFCFPPHCTHKMQPLDVSFFGPLNTFYNQELHIWLRNHPGRTVTHFQVAELFKQAYLRAATVSNGQNGFAASGIYPLNENIFPDWMFAPADVTDNVLGDSSVPILPDNASNQESQDLQLTKHGEAPLLDAQTSRPNDQTEEEPPVPQLNDDTIAGPSVPTSSHDQIQSSLTIADISPLPKSSQIKRSVHKKGKFGMLNASPDIALLKAAVAEKEVANMRKSARQVKKRIVLGVSSDEEEPVASDDEDPPCIYCNEPWSHSRSREWWLQCQVCRQWCHAECIGLPKTAKNVICDVCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00373907;
- 90% Identity
- iTF_01230497; iTF_00120426; iTF_00758092; iTF_00850608; iTF_00850610; iTF_00850611; iTF_01084190; iTF_01230495; iTF_01230496;
- 80% Identity
- -