Lole041726.1
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- -
- Assembly
- GCA_950371165.1
- Location
- OX493413.1:4176429-4177229[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-08 5.4e-06 27.5 0.0 4 39 14 49 12 54 0.91 2 2 6.7 2e+03 0.0 0.0 19 34 142 157 133 165 0.70
Sequence Information
- Coding Sequence
- ATGGCTAcaaaacgaaaatattatgcGTGGAATGAAGTAAGCATGAACCTAGCCATTGAATCAGTGCGTAAAAATAAAGCAGGTTTGAATGTGGCAAGTAGGATGTATGGAGTGCCTAAAGCCACACTAAAACGAAGATTGGATGGTGTGAATCAAAAGGCTAAGGAACATGTTCAAATAGTAGGATCTTTCGATATTCGGCAGCTGGCATTTGAACTGGCAGAAAAGAACAATATCAAAAATCGATTTAACAAAGAGAAAAGAATTGCAGGTAAAAAATGGTACTATGCGTTCATGAAGCGGCATCCACAATTATGTTTGAGACAACCAAGAGCAACTTCAATGAGCCGGGCTACTGGATTTAACAAACCTGCtgtaaccgatttcttcaataTATTAGAGGCAGTATGCGAAAAATACAACATAACAGAAGCGCAGCGTATCTTCAACGTTGATGAGACGGGCTTGTCAACTGTCCAGAGGAAAACAAGAAAAATACTGGCATTAAAAGGTAAGCGGCAAGTTGGAGCTATTACTAGTGGAGAACGTGGTACAAATACTACAGCCGTATGTTGTGCTAATGCTGCTGGTAATTTTATACCACCGCTTATAATATTTAAGCGCAAGAGAGCAAAAGACGAACTCAGGGATGGAGCTCCACCTGGTACAATATTTGCTTTTAATCCAGAGAGTGGATATATTAACAaagacatattttatttgtggttACAACACTTTATTGAGTCTGTGAAGCCGacacctgaaaaaaaaagtactacTTCTGTTAGATGGTCATGCTAG
- Protein Sequence
- MATKRKYYAWNEVSMNLAIESVRKNKAGLNVASRMYGVPKATLKRRLDGVNQKAKEHVQIVGSFDIRQLAFELAEKNNIKNRFNKEKRIAGKKWYYAFMKRHPQLCLRQPRATSMSRATGFNKPAVTDFFNILEAVCEKYNITEAQRIFNVDETGLSTVQRKTRKILALKGKRQVGAITSGERGTNTTAVCCANAAGNFIPPLIIFKRKRAKDELRDGAPPGTIFAFNPESGYINKDIFYLWLQHFIESVKPTPEKKSTTSVRWSC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01031081;
- 90% Identity
- -
- 80% Identity
- -