Lole036313.1
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- -
- Assembly
- GCA_950371165.1
- Location
- OX493408.1:3640163-3642364[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-09 8.4e-07 30.1 0.0 3 37 17 51 15 57 0.93 2 2 7.8 2.3e+03 -0.2 0.0 22 30 142 150 128 151 0.75
Sequence Information
- Coding Sequence
- ATGTCTCGGAAGTACGAAAGAACGACACTACGAGCATCATGGAGTGCGGACGACTTAGATAAAGCCATGCGTAGTGTCCAAGGCAAAGTTATGGGTGTTAATGAGGCATCCAGAAACTTTGGCATACCGTCTCGAACTCTAAGAAGACACATTTTATCCGGAAAATCAAAGGGCCCTCTAGGACGAAAGCCAGTATTTTCTGTAGAATATGAAAAAAAGCTGGTTTCCCATATAAAGAAATTGGAAAAAGTTGGATTTGCCCCTGACAGAAAAGATGTAAAAGAAATGGCATTTCAACTAGCTAAgaaactaaatattaaaaacccATTTTCAGCAAGCTCAGAATCAGCTGGAAATGTGTGGTTTTCGGGATTCATGGCTCGTAACTCTGAATTAAGCCAAAGAAAATCAGAAGGTTTGTCACTTGCTCGAGCTTATGGAGTTAATAGAAGAGATGTACAGGATTTTTTTGATTTACTATCCAAAATCTATGAAGAAAATGATTTTGCAAATCACCCCGAAGATATTTTCAACATGGACGAGTCTGGCATACAGGTGAACAACAAGCCAGGAAGAGTAATTGCCACAAAGGGAGCCAAAGATGTCTATACGCTCACTAGCTCTGAAAAGGGTGAAAACGTAACGGTGATTGCTTGTTGCAATGCTCAAGGTAACTTCCTTCCCCCTGTTTTAATCTATAAAGGTACTTACAACAAACCACAATTTTCCGAAGGTCTTCCTCCAGGTTCACAGGTTTTCATGAACAAAAAATCTTCTTATATTAATACAGATCTCTTCATGAAATGGTTTGAAGAAGTGTTTCTGCGTCACAAGAGTCCTCgaaaaacattattaatattagATGGTCATAGCTCGCACAGTAACAATATTCGCCTACTGGAAGTGGCTAAAGAAAACGATGTTATTCGTTTGTGCCTACCAAGTCACACTACGCATGCTCTGCAGCCTCTTGATAGAGCCTTTTTTAGGCCATTGAAGGTATACTTTGCCCAGGAAGCGAAGACATGGATGGTCAGGAACAAAGAGAAGAAGTTGACACGCTATGACGTGTCTAAGTTAATCGGACGAGCTTGGGGCAAAGCTGCTACTGTTTCCAACGGTGTGTCAGCTTTAAATTCATGCGGAATTTATCCTTTTGATCCAAGTGCCATTCCTGATCACTATTTTTCACTATCTGATTCGCTGCGAGACCAAAATTTAGTTGTCGAAGATGAGGATGGGACGTCAAGAGAGTCTCTGTCATTACTTCATGAATATGGCGATAGTGCCTTTGATACAATCCGCTCTTCACCGCAGCAGGTCGTAAATAATTTAGAGCCCAGGACATTAGGATCACCACCAGTCGTTGTGACTGAGAGAGAACCTGAGCCAGGACCTTCAGGACTACATCTAGCTAATCAAAATTACGAAGATAGTTTGATGGAAGTAGTAACAGAACATTCATTGCCTGTGCAAGATCTACCTGTGGCAGAAGATTTTGACCAAATGAATATCATATTGCCAAAAACACCACAAAAATATCCGATACAATTTCGTATCGAGAGTGAGGCCTGTCTGACTATCGCGAAGTCTAATCTTATTGATTTGATTGAACAAACTCCTGAAAAGCAAATAGGATCTACTGAGTCTGAAGCAACACCATCCAAAGTTTTGAGTGAAATCCATCCAGTGCCTAAACTTCCTGTAGTATTGTCTAAGAGAAAacaaaaagctgttattttaaCTTCTGATGAAAATATAGAGAAACGGAAAGTGATTGCTGATAAAAAGAAACCAAATACTGGAAAATTAAAGCAGGCCAAGaccacaaaacaaattaaaacagtgaAAGTAAAAGATGGTGTCAAAAGGAAACAAAATGGGGGTATAAAGAAGCCAAAGAAAGGTCCTGTTAGaaataagaataagaaaaaaGTGAGCTGGTCATCGTCTTCTGAAAGCAATGATGAAAACGACGTTAGGTTAGATACTTCTGAAGAAGAAATGTCAGACGAACACGATGACGTTAACAGATGTGTTGAATGCACCGAAAATTATTATGACACACAATCCACTGAAGATTGGATTCAATGCCCGTCTTGTTTAACATGGTTGCATGAGTTTTGCACTATGTATAACCCAATGTGTAATCGTTGTGGACGAAAAGCCAAAAAGGAAGCTGTTAACAAAAATAGAGTCTAa
- Protein Sequence
- MSRKYERTTLRASWSADDLDKAMRSVQGKVMGVNEASRNFGIPSRTLRRHILSGKSKGPLGRKPVFSVEYEKKLVSHIKKLEKVGFAPDRKDVKEMAFQLAKKLNIKNPFSASSESAGNVWFSGFMARNSELSQRKSEGLSLARAYGVNRRDVQDFFDLLSKIYEENDFANHPEDIFNMDESGIQVNNKPGRVIATKGAKDVYTLTSSEKGENVTVIACCNAQGNFLPPVLIYKGTYNKPQFSEGLPPGSQVFMNKKSSYINTDLFMKWFEEVFLRHKSPRKTLLILDGHSSHSNNIRLLEVAKENDVIRLCLPSHTTHALQPLDRAFFRPLKVYFAQEAKTWMVRNKEKKLTRYDVSKLIGRAWGKAATVSNGVSALNSCGIYPFDPSAIPDHYFSLSDSLRDQNLVVEDEDGTSRESLSLLHEYGDSAFDTIRSSPQQVVNNLEPRTLGSPPVVVTEREPEPGPSGLHLANQNYEDSLMEVVTEHSLPVQDLPVAEDFDQMNIILPKTPQKYPIQFRIESEACLTIAKSNLIDLIEQTPEKQIGSTESEATPSKVLSEIHPVPKLPVVLSKRKQKAVILTSDENIEKRKVIADKKKPNTGKLKQAKTTKQIKTVKVKDGVKRKQNGGIKKPKKGPVRNKNKKKVSWSSSSESNDENDVRLDTSEEEMSDEHDDVNRCVECTENYYDTQSTEDWIQCPSCLTWLHEFCTMYNPMCNRCGRKAKKEAVNKNRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00906049;
- 90% Identity
- iTF_01439841;
- 80% Identity
- -