Lole023981.1
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- -
- Assembly
- GCA_950371165.1
- Location
- OX493399.1:138292-139350[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-12 3.3e-10 41.0 0.0 1 37 13 49 13 57 0.92
Sequence Information
- Coding Sequence
- atggaCAAGGTTAAAGCTGTTGATCCAAGAAAATGGACGGAAAAAAATATGCAGAAGGCGGTGGAGGatgtaataaataagaaaatggGGGTAAATGAAGCGAGTCGTTTATATGAAATACCTTCGCGTACATTGCGAAGACACATCCTCAAGGGTTGGAGGTCTAAGCAGAGAATTGGAAGACCTTCTGAATTGGGATATGAGAACGAACTAAAACTTGTAGCTCACATTAAAAAGCTTGAATCCATCGGATTTCCCTTGGAGCAATCGAGACTGCAGTCTATAGCTTACGACTTTGCTGAAAATCTTCGATTGCCACATCGATTCAATAATGAGAAGAAGTCAGCAGGCTGGGATTGGTTTCAAGGATTTACGAAGCGTCATCCAGACCTGAGTAAACGTAAAGCAGAAGGCCTGTCATTGGCAAGAGCTAGCGGTATGAATAGACAGGATGTcgataaatattttgaaatgttgTTGAAGGTATTGACTGATAACGATTTGATTAGTAAACCGGAAAGAATCTACAACATGGACGAAAGCGGAATACAAGTTAACAATAAAACTGGACGCGTACTTGCTAGCAAGGGTGCGAAATGTGTAAATACTATAACCAGTACCGAAAAAGGTGAAAATATATCTTTGATTGCGTGCTGCGATGCGGAAGGTACTTTCCTTCCGCCTATTTTGATACTGAAGGGTAAATACAAAAAACCGGAATTTTGTGAGGGTCTACCACCTGGCTCAAATGTATACATGAATCAGAAATCATCTTACATCAACGCTGAACTATTTTTGAAGTGGATGAAAGAGCATTTTATACCACGAAAGCAAGATGGCAAGGTTCTTCTGATTTTAGATGGGCATGGCAACACATGTGTAGAATGTCACGAGAATTACTACCGTATCAAGAATGGATTCGATGTTTGCAGTGTTCTGGCTAGTTACATGAAGACTGTACAAGTTATAGAGAGAAATGCAATAACTGCGGTACCAAAGAAAAAGGAAAAGGGAAAGGAAAAAGAACCTCTAAATGAGAGGTTTTGCTGGGGCACATAA
- Protein Sequence
- MDKVKAVDPRKWTEKNMQKAVEDVINKKMGVNEASRLYEIPSRTLRRHILKGWRSKQRIGRPSELGYENELKLVAHIKKLESIGFPLEQSRLQSIAYDFAENLRLPHRFNNEKKSAGWDWFQGFTKRHPDLSKRKAEGLSLARASGMNRQDVDKYFEMLLKVLTDNDLISKPERIYNMDESGIQVNNKTGRVLASKGAKCVNTITSTEKGENISLIACCDAEGTFLPPILILKGKYKKPEFCEGLPPGSNVYMNQKSSYINAELFLKWMKEHFIPRKQDGKVLLILDGHGNTCVECHENYYRIKNGFDVCSVLASYMKTVQVIERNAITAVPKKKEKGKEKEPLNERFCWGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00458785;
- 90% Identity
- iTF_01076333;
- 80% Identity
- -