Dcar011698.1
Basic Information
- Insect
- Diorhabda carinata
- Gene Symbol
- -
- Assembly
- GCA_029229535.1
- Location
- CM055257.1:16040810-16042075[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.3e-13 1.6e-10 41.0 0.0 1 37 13 49 13 58 0.87
Sequence Information
- Coding Sequence
- atgGGAAAGGTTAAAGCTGTTGATCCAAGAAAATGGACGGAAAAAAATATGCAGAAGGCGGTGGAGGAtgtaataaataagaaaatgggAGTAAATGAAGCGAGTCgtttatatgaaataccttCGCGCACATTGCGAAGATACATCCTCAAGGGTTGGAGGTCTAAGCAGAGAATTGGAAGACCTTCTGAATTGGGATATGAGAACGAACTAAAACTTGTAGCTCACATTAAAAAGCTTGAATCCATCGGATTTCCCTTGGAGCCATCGAGACTGCAGTCTATAGCTTACGACTTTGCTGAAAATCTTCGATTGCCACATCGATTCAATAATGAGAAGAAGTCAGCAGGCTGGGATTGGTTTCAAGGATTTATGAAGCGTCATCCAGACCTGAGTAAACGTAAAGCAGAAGGCCTGTCATTGGCAAGAGCTAGTGGTATGAATAGACAGGATgtcgataaatattttgaaatgttgttGAAGGTATTGACTGATAACGATTTGATTAGTAAACCAGAAAGAATCTACAACATGGACGAAAGCGGAATACAAGTTAACAATAAAACTGGACGCGTAATTGCTAGCAAGGGTGCGAAATGTGTAAATACTGTAAACAGTACCGAAAAAGGTGAAAATATATCTTTGATTGCGTGCTGCAATGCGGAAGGTACTTTCCTTCCGCCTATTTTGATACTGAAGGGTAAATACAAAAAACCGGAATTTTGTGAGGGTCTACCACCTGGCTCAAATGTATACATGAATCAGAAATCATCTTACATCAACGCTGAACTATTTTTGAAGTGGATGAAAGAGCATTTTATACCACGAAAGCAAGATGGCAAGGTTCTTCTGATTTTAGATGGGCATTCTTCGCAttccaattcatatgaaatacTACAATTGGCATCTGAAAACGATGTGATTATCCTCTGTCTACCAAGTCATACTACTCAGGCTCTTCAACCATTGGATAGAAGTTTTTTTAAGCCATTCAAAAGTTACTTGTCTAAAGAAGTTTCCACTTGGTTTATCAACAACAAAGGCCGACCTTTTAATCGATACcacatttcaaaaatgattgGTGATGCCTGGTTCAAGTCTGCTATACCAGCAATTGGCGTTTCAGGATTTAAAGCGACAGGGATTTGCCCTTATGATCCCAATGCTGTGCCTGAATATTTCTTCAGAATTTCTGATGCATCAATGGGAAGTATTCAGAATAATGATGATTCGCAAGCAATTAATAATCATTACATCTCtgattag
- Protein Sequence
- MGKVKAVDPRKWTEKNMQKAVEDVINKKMGVNEASRLYEIPSRTLRRYILKGWRSKQRIGRPSELGYENELKLVAHIKKLESIGFPLEPSRLQSIAYDFAENLRLPHRFNNEKKSAGWDWFQGFMKRHPDLSKRKAEGLSLARASGMNRQDVDKYFEMLLKVLTDNDLISKPERIYNMDESGIQVNNKTGRVIASKGAKCVNTVNSTEKGENISLIACCNAEGTFLPPILILKGKYKKPEFCEGLPPGSNVYMNQKSSYINAELFLKWMKEHFIPRKQDGKVLLILDGHSSHSNSYEILQLASENDVIILCLPSHTTQALQPLDRSFFKPFKSYLSKEVSTWFINNKGRPFNRYHISKMIGDAWFKSAIPAIGVSGFKATGICPYDPNAVPEYFFRISDASMGSIQNNDDSQAINNHYISD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00458786; iTF_00850554; iTF_00458792; iTF_00835499; iTF_00637439;
- 90% Identity
- iTF_00458786;
- 80% Identity
- -