Lole001734.2
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- bab1
- Assembly
- GCA_950371165.1
- Location
- OX493385.1:4809232-4814259[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.9e-17 2.6e-14 54.1 0.0 1 43 40 83 40 85 0.95 2 2 8.8 2.6e+03 -0.3 0.3 6 15 178 187 167 189 0.80
Sequence Information
- Coding Sequence
- ATGCAAATTTTGGATAGCTACCAATACCAACTTCAGTCGATGTGGCAGAAGTGCTGGAACACGCAGACGCTAGTCCACAACCTGCGGTTCCGCGAGCGCGGGCCCCTGAAGTCCTGGCGCCCCGAGACCATGGCCGAGGCCATCTTCTCCGTGCTCAAAGAGGGACTCTCCCTATCACAGGCAGCCCGAAAATACGATATTCCGTACCCGACGTTCGTGCTCTACGCCAACCGAGTCCACAACATGCTGGGCCCCAGCGCTGATGGCGGCGCAGATTTAAGACCAAAGGGAAGGGGGCGGCCGCAAAGGATCTTACTGGGCGTTTGGCCCGACGAGCACATTCGCGGCGTAATCCGCGCGGTAGTGTTCCGCGACACCCACGCGCCGTGCGCACCGCAGCCCACCAACCTTAAAGAGATCGAACTGCCGGGCTACCCCGCCATCGCACCGGACGGTGTGGCCGTTCAGAACGCTTACATTGGCGCGTGCGGCAACGGGCGCGAGGGCCGCATGTCCCCcaacgccgccgccgccgccgccgtggccGCAGTCGCGCACGGCCTGCGCCGCCAGATGTGCAACATGGTGGCGGGCCAGCGGCCGCCCGACCATCCGCCGCACCTGGGCCCACCCATGCAGGCCTCGCCACAGCTCACCTCGCCGCTGTCTGCCGGCCTGGAGTCGCCGCTGTGCTCGCCCCCGCCGCCCGGCCACGCGCTCGAGCCAGCCAAGCACCCGGACCCCTTCCGCCCCTTCGCCTCGCCGACTGACAGCCGCTATGGCGACCGCGACACTTCATCTGACATTACGCTGATGGGACCGCCGAAGAATGGCCAGCAGGGCCACGGTCGCAAGGGCTCTGGCCAGGGCTCGTCGCCCTCCGAGCTGGACGCGGCGGACGGGCGCGCGGACATCTGA
- Protein Sequence
- MQILDSYQYQLQSMWQKCWNTQTLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHAPCAPQPTNLKEIELPGYPAIAPDGVAVQNAYIGACGNGREGRMSPNAAAAAAVAAVAHGLRRQMCNMVAGQRPPDHPPHLGPPMQASPQLTSPLSAGLESPLCSPPPPGHALEPAKHPDPFRPFASPTDSRYGDRDTSSDITLMGPPKNGQQGHGRKGSGQGSSPSELDAADGRADI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01425864;
- 90% Identity
- iTF_00794266;
- 80% Identity
- -