Lmin000343.1
Basic Information
- Insect
- Labia minor
- Gene Symbol
- Trl_3
- Assembly
- GCA_963082975.1
- Location
- OY720344.1:1431021-1435944[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.58 7.4e+03 -1.8 0.1 9 22 134 147 128 170 0.69 2 3 1.8 2.3e+04 -3.3 0.5 3 15 325 337 322 345 0.70 3 3 4.7e-13 6e-09 37.0 0.9 12 44 435 467 430 473 0.91
Sequence Information
- Coding Sequence
- ATGGACAATCAAATTGAAACAACTCCAACTGCTACTACAATTCAGCGCGTCGCTATTAAAATTCCCCCACTTTGgcgcaaaaatattaaaatatggagAATGCAGGTAGAAGCACAATTTTCTAATTACTCCGTCACAACTGAGctgactaaatttaattatgttttggcTTCGTTAGATTCAGATGTCGCTGAATTAGTTtcagattttttatcaaaagagcTCTCTAGTAAGCCATACACAGATCTAATGGACCGATTGCAAAGAGAATTTGAGGAATCCGAAGGTAGGAAAGTGACAAAATTATTAACAGAAATCGAGCTTGGCGACAAGCGACCCAGCCAATTACTGCGCGTCATGGACGAATCAAGTGATTCTACCCCTGGACAACAACAACCACCATCATCAACCACAGTTCCAACATCGAATTCACAACCACAACTTTATTCATTATGTTGGGGTGAATTCAGTCAATCATTAGTAGCTGCTGTACAATTTTTGCGATGCCATGATGATTTGACGGATGTCACTCTTGCAGCTGGAGGCCGAAGTTTTCGTGcgcataaaattgtattaagtgCTGCAAGTCCTTTCCTTcttgaattattaaaaAATACTCCTTGTAAACATCCAGTGATATTATTAGCTGGTATATCTGCTTCCGATTTAGAACATGTGTTAGAGTTTGTCTATCGTGGTGAAGTGTCTGTTGATCCTAATCAATTGCCTTCACTTCTACAAGCAGCCCATTGTCTTAATATTCATGGTCTAACTGTTGGTGTTAATTCTAATGCTGCGGCTTTGGCAGCTGCTGCAAACGCAGGTCTCCCTATTCATCCACATCATTTACAGTGGTCAGCTTCCAAACCGGACGACCCATCCTCTTCACTCTCTGCTACTCATCCTGGATCTCATACGGCACCTACCTCGGCGGATATTTTAGCTGCCTATTTACCTACAACACCGAAACGTCGTAAACGAGCTAAACGTCGTTCTGGACCTGGCAAATGGTCATCGGGCGATAGTGGAGAAGAGACCAATCCGAATACATCAGGTGCCGAAATGTTGACATCAATGCCACCCGATTTAGCGACAGCGGCAGCAGCAGCCGCCGCGGCCGCAGCTGCGGCAGCTGCAGTCCGGAAAATCGACGATTCCGATTCTGCCACTCCGGGACATCACTTCGCCTCCCTTTGGACAACAAGCGGCTTGGGCAGCAGCAGCGGAGGCgggaacaacaacaacaccacCACCACCTCAACAACCACCACCCTCACCACTTCAACAACACCATACTCCTCAACACACAACAGCAAACTACGAGCGGCATCGGAGCAACCGGGGATGTGTCCATTTTGTGGTTCATTGCTGCGACAATCCCGTAATCTACGACGACATTTACTTACTTCATGTCGTTATCGAAGTATGGCCACTGCATCCTGTTCAACATCATCAGCAACGCTTAGCGAGACATTAGCCGCCCAGGGTACACCTGAGCATATAATATGCCGAGTGTCCCCACCACCATCTGCATTATCCCCAGGCACACCAACACCTCCCCCACACCAGGGGATCGTGATGGAGTGA
- Protein Sequence
- MDNQIETTPTATTIQRVAIKIPPLWRKNIKIWRMQVEAQFSNYSVTTELTKFNYVLASLDSDVAELVSDFLSKELSSKPYTDLMDRLQREFEESEGRKVTKLLTEIELGDKRPSQLLRVMDESSDSTPGQQQPPSSTTVPTSNSQPQLYSLCWGEFSQSLVAAVQFLRCHDDLTDVTLAAGGRSFRAHKIVLSAASPFLLELLKNTPCKHPVILLAGISASDLEHVLEFVYRGEVSVDPNQLPSLLQAAHCLNIHGLTVGVNSNAAALAAAANAGLPIHPHHLQWSASKPDDPSSSLSATHPGSHTAPTSADILAAYLPTTPKRRKRAKRRSGPGKWSSGDSGEETNPNTSGAEMLTSMPPDLATAAAAAAAAAAAAAAVRKIDDSDSATPGHHFASLWTTSGLGSSSGGGNNNNTTTTSTTTTLTTSTTPYSSTHNSKLRAASEQPGMCPFCGSLLRQSRNLRRHLLTSCRYRSMATASCSTSSATLSETLAAQGTPEHIICRVSPPPSALSPGTPTPPPHQGIVME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00849992;
- 90% Identity
- iTF_00849992;
- 80% Identity
- iTF_00849992;