Lmin012468.1
Basic Information
- Insect
- Labia minor
- Gene Symbol
- PGBD3_1
- Assembly
- GCA_963082975.1
- Location
- OY720345.1:71592495-71600796[-]
Transcription Factor Domain
- TF Family
- PAX
- Domain
- PAX domain
- PFAM
- PF00292
- TF Group
- Helix-turn-helix
- Description
- The paired domain, a ~126 amino acid DNA-binding domain, is found in eukaryotic transcription regulatory proteins involved in embryogenesis. Initially identified in Drosophila’s paired (prd) protein, it typically resides in the N-terminal region and may be followed by an octapeptide, a homeodomain, or a Pro-Ser-Thr-rich C terminus. Paired domain proteins act as transcription repressors or activators, with DNA-binding specificity mediated by three subdomains. Crystal structures reveal a bipartite DNA-binding paired domain: an N-terminal subdomain (PAI) and a C-terminal subdomain (RED), linked by a flexible linker. Both subdomains contain a helix-turn-helix motif that binds DNA's major groove, while the linker may bind the minor groove. Variations in domain usage across Pax proteins and isoforms determine sequence specificity.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.2 1e+04 -2.6 0.0 79 102 70 93 64 98 0.82 2 3 4e-08 0.00013 23.0 0.3 20 103 152 234 144 272 0.83 3 3 1.9 6.2e+03 -1.9 0.0 86 113 478 505 466 513 0.79
Sequence Information
- Coding Sequence
- atggaaatagaacaagaaataaaaatagaatgtcCTAATGATGCAGcaTTTATTGATTGTGTACAAGTCTGTGTTATTAAAGAGGAAATTCAAGAAATAGATGATAATCATGATAAAACTTATAATTATCATGATTATTCTGATGAAGAAGAAAgtgaagatgatgatgatgaagaaaaaaatgtttctagTGAATTCACATTAAAGGCAATAAGGGAAAAATTACAAGCATTCCAAAAAAATGAAGCACCAATATTTACTTGTGAAGTATGCAACGAAACTTACAAACAAAAGGGACATTTAACATTACATAAACAAATTCATACTGAAGAGAAACTTTTCCCATGCCTGGAATGTCCTGTTCGATTCAGTAAAAAAGCGGCCTTAGATAATCACATAAAAATAGTTCATCCTAAAAAgagGGGAAGGACACAAGGACGTAAAAATACAACAGAAGAAGAACGAGGGCAAATCATTGGCATGTATAAATCTGGGGCCACAATATCAAAAATTTCTAGGGAATTACAAATGGATAGAAAAACAATTcgaaattggattaaaagatataatgaaacttgtgaTTTGAGATCTTTACCGAAATCAGGACGACCTAAAACAACATCTAAAACAGAAgatcaaaaaattattcaacataTAAAACAGAATCCATTTGCTACTGCAACTTCAGTActtgaaaaattagaattaaattgttCTGAATGGACAGTTAGAAGAAGGTTACATGAGGCGGGTGTATTAAATAACACCCCATCAGATACCACTCCTGTTAAAGAATCGATAAAAAAGAGGTTGCGTGAAACacaatttGTTGATTGTACACCAACATGTGTTATTAAAGAAGAAATCAATGATGAAGATGAAATTCAAGAAATGGATGACATTCATGATTTTTCTGATCAGCTTGAGAAATTGCAACaggtagaagaaaaaaaagtcaCCCATGAACAGGATAAAAATGGCGAAGAGGGAGAAGTTTTACATCAGCTTCAGAAGTTGCAAAAGGAGGAAAAAATTTATCTATGCGTGGAATGTTTCAAtacattcaataaaaaacaatcattAATTGATCACATGAGAGCTGCGCATCCTAAAAAACGTTTGATATTAGCTATTGAACCTAGCACAAGTGTTTTTGTTGATTTAGAACTGGCGACTGATCTGAATATCAAggaTATGAAGTTGAAGGATGTTATAGATTTGTTGGAAAATGATGAAAGCTGCGATGTCGAAGCTATTTGTATAGAAGCACCAGAACCTGCTGAAATTTCCGATGAAGATTCAGCAGAAGAAGATGAGGGTGGACTTATAGAGAACATGAGTGGACGTATACTAGAAACTACTGCCTATATGATTATGAGAAACCCAgacaaagaaaaagaagatgttCTTGAAGATTTTGAAGCTGcaccaaaatataaaaaacgtaGGAAACCAGATTTTAGTTGGAAAAAAGATGATTTAGttgtttcaaattcaatttttcctgATGCAAATTATTCGTCTTATAGAAATTTGACACCTATCCAGATTTTTGAACAAATTATTGATGACGaagttattcaattaattataaacgaaACTAGAAAATACAATGCTTCAAAAAATCATAAAGATCTAAATATAACGGTTCAAGAATTAAAGTATGGTGGAGTATTATGGCAACACGGATGTAAGCAATTTATCCGTGGTAAACCAATACGTTTCGGATATAAAGTATGGTGCTTGAATACGCCAAGTGGCTATTTATTGGATTTTGAGATATACCAGGGGAAAAAGCCGAATAGCAATGAGGTATATGACATTGAGTTTGGAAAAGCGGCAGCACCTTTAGTGCAGATGTTGGATAATTTGCCAGATGATAAAAAAGCATTTACCCACAAACTGTATTTTGATAATCTTTTTACAAGTACCTCATTGCTCATACATTTACGCGAGCGGAATTATAACGGAATTGGTACGTTCAGAGAAAACAGATTACCAAAAAATTGTCTCTTCTCTCaggctaattttataaaaaagcaaGAAAGAGGGTATTTCGAACAACAAACTTGTACAGAGGAAGGTATTACTATAGTAAAATGGCTGGATAATGCTATAGTAACTATAGCATCTACATGTCATGGACCACAACCTGTAAGCAAAGTATCTCGCTACAGtagacaacaaaaaaaaattataaacgtaCCGCAACCTGCGGTTATCGccaattataacaaatttatggGTGGTACAGATTTGATGGACCAAAATGTGGCATGCTACAGAATAGGAATGCGTGGTAAAAAATGGTACTGGTCTATTTTTACGTGGCTTTTGGACGTTGCTATGGTAAATTCTTGGATACTAATGAAAAAATCGGGAAATGGTATTTCTCAATTAGAATTTCGTCGTTATATTGTtactaattatttagaaaaatttaaaaatccgcCAACTGGATCCGGTCGTCCTTCGACCTCAAAATTTAGTAACATATCAGTTAGAGTTTCTGATGATATACGTCTTGATAATATTGGACATTTGGTAGGGCCTTGCAATAGGCGTAGATGTTGTGCAGCTACATGCAAAAGTACAATAAGAACTGAATGTATAAAATGTCAAGTAGGGCTATGTATTAATTGTTTTGCTCAATTTCATTCCAAGTAA
- Protein Sequence
- MEIEQEIKIECPNDAAFIDCVQVCVIKEEIQEIDDNHDKTYNYHDYSDEEESEDDDDEEKNVSSEFTLKAIREKLQAFQKNEAPIFTCEVCNETYKQKGHLTLHKQIHTEEKLFPCLECPVRFSKKAALDNHIKIVHPKKRGRTQGRKNTTEEERGQIIGMYKSGATISKISRELQMDRKTIRNWIKRYNETCDLRSLPKSGRPKTTSKTEDQKIIQHIKQNPFATATSVLEKLELNCSEWTVRRRLHEAGVLNNTPSDTTPVKESIKKRLRETQFVDCTPTCVIKEEINDEDEIQEMDDIHDFSDQLEKLQQVEEKKVTHEQDKNGEEGEVLHQLQKLQKEEKIYLCVECFNTFNKKQSLIDHMRAAHPKKRLILAIEPSTSVFVDLELATDLNIKDMKLKDVIDLLENDESCDVEAICIEAPEPAEISDEDSAEEDEGGLIENMSGRILETTAYMIMRNPDKEKEDVLEDFEAAPKYKKRRKPDFSWKKDDLVVSNSIFPDANYSSYRNLTPIQIFEQIIDDEVIQLIINETRKYNASKNHKDLNITVQELKYGGVLWQHGCKQFIRGKPIRFGYKVWCLNTPSGYLLDFEIYQGKKPNSNEVYDIEFGKAAAPLVQMLDNLPDDKKAFTHKLYFDNLFTSTSLLIHLRERNYNGIGTFRENRLPKNCLFSQANFIKKQERGYFEQQTCTEEGITIVKWLDNAIVTIASTCHGPQPVSKVSRYSRQQKKIINVPQPAVIANYNKFMGGTDLMDQNVACYRIGMRGKKWYWSIFTWLLDVAMVNSWILMKKSGNGISQLEFRRYIVTNYLEKFKNPPTGSGRPSTSKFSNISVRVSDDIRLDNIGHLVGPCNRRRCCAATCKSTIRTECIKCQVGLCINCFAQFHSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00850194;
- 90% Identity
- iTF_00850194;
- 80% Identity
- iTF_00850194;