Kmac005043.1
Basic Information
- Insect
- Kuschelorhynchus macadamiae
- Gene Symbol
- PHF20
- Assembly
- GCA_030620095.1
- Location
- JAUTXW010000128.1:89836-93264[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2 5.3e+04 -3.2 0.0 45 69 218 242 218 246 0.78 2 2 5e-19 1.2e-14 56.6 0.0 8 70 451 512 445 518 0.94
Sequence Information
- Coding Sequence
- ATGGGCAAAAAATGCAGTGTAGAAAACTGTGCATCAGATTCCACAAAACCAGAGCATACTGGGGTCACATTTCATAAAGTTCCCCTTCATTCGGACGTACGCCCCAAATGGTTATCCCTCTGTCATATACCTGACGATAAAACCAATGTTAAACTGTTATACGTGTGCTCCCGACATTTTCTACGGGCTGATTTCTGTAGTTTTAAGGGTAAAAAGTACATGTTAAGGCAGGGAGTGCTGCCAAGTGTATTTCCTTGGGATAAGTCCAGATTAGAAGCCATAAAAGCTGAGGTAAGTAGTAAGAAGGATGTTGATGTTTCAAAAAAGAAGGATAAGCCGAAAACTGGaagaaaaaaacaagtaaaaacacAGGATAATTCTGTTATCCAGCCAAAAGCTGATGATTCTAAAAGCATATCCACAGAAACTAAAATTAAAGTTGAACCTGAAGAAATTAAAGAAGAAGCTGAGGCATTGTTGAAAGAAGAGGTGCAGGAGTGTGCTGGAGATAAACCATTGATAGAGGCAGATATTAAACATGAATTTAAGGAGGAAATACTAGGAAACGAACATGTTAGTCATGAAATGGACCCCTTTGATCAACTTCAAAGATCTCAGAATGCATCTGCAGCTTCTGCAcctattaattttagtattaactCGTGTATTGAGGTTcttgataataataatgtttggTATCCAGCCAAAATAAATGAGGTCGATTATGAGGAGAGTGAGGTGCTTATTCATTTTGAGAAGTGCTCTAACAAATGTGATGAATGGATTTCAATGACAAGTCCAAGGCTTAGGTCATTGAAGTCCAAATCTGAGGAAATAGTTAAGATAGATGACAATTGTATGTCTGTGTGGGAAGACTTTAAGAAATTTCCTGCTACTGTTACAAAGAAGTTGGAAAATGatACCAGTGAAATATTAATTGATGATGGATTGGTGAAATCCATTAAGAATAACAAAATGGCAAAATCGAATGTAATTAAGCCCCCTCAGTCTTCACCATTATTTGATCCAGTAAAAGGTACAAAGCAGGAAAGACGAGACAAAAAAAGGAAGCTTAATGTTGCTGCACTATTTTCTAAAAGACCTCGGCTTAACAACACTGAAGAAAAAAAGAGTAAATCTAGTCCGGTCCCGGCAGTTCAGTCAACTCAACCTGTGGAGGAAACAGCTGTTTCTCCAGCTTCTCAAGAAGAGACTAATGTTGTTGCTGCCTCTCCAACACCACCAGCACCAGTAACTAGATGGCATCCAAGttgGGAAAATGGTAAACCCATTGGTGTAGAATCCACTATAGAAGGTGTGGATGGTTTAAGGAAGTCTGTTATCGTACCGGATCCTAGATTACCACTGGGTTGGGCAAAACATCTTACTCAAAGGATATATGGAAATTCTATTGGAAAATGGGACACTGTGATTTTAGCCCCAGATGGTAAAAAATTCCGCTCGAAACAAGAAGTAACAAATTATCTCGATCTGCATCCCGGAGTTGAAGCCACCATCGACATGTTCGACTTTAGTCTTTACCGTGGAAGTAATAAAAAGAGAGCTGCAAAACCAAAAAAGAAACATGCTGAACCGAAATCTCAGCCTTTGGAAGTACCGGTTGAAGTTCCTCCTGTTGAAGAACCCACTATAAAAGAGGAAgGTCAGATGGGAGTGTGCAAGTGCATAGTATGTCGTCATTAG
- Protein Sequence
- MGKKCSVENCASDSTKPEHTGVTFHKVPLHSDVRPKWLSLCHIPDDKTNVKLLYVCSRHFLRADFCSFKGKKYMLRQGVLPSVFPWDKSRLEAIKAEVSSKKDVDVSKKKDKPKTGRKKQVKTQDNSVIQPKADDSKSISTETKIKVEPEEIKEEAEALLKEEVQECAGDKPLIEADIKHEFKEEILGNEHVSHEMDPFDQLQRSQNASAASAPINFSINSCIEVLDNNNVWYPAKINEVDYEESEVLIHFEKCSNKCDEWISMTSPRLRSLKSKSEEIVKIDDNCMSVWEDFKKFPATVTKKLENDTSEILIDDGLVKSIKNNKMAKSNVIKPPQSSPLFDPVKGTKQERRDKKRKLNVAALFSKRPRLNNTEEKKSKSSPVPAVQSTQPVEETAVSPASQEETNVVAASPTPPAPVTRWHPSWENGKPIGVESTIEGVDGLRKSVIVPDPRLPLGWAKHLTQRIYGNSIGKWDTVILAPDGKKFRSKQEVTNYLDLHPGVEATIDMFDFSLYRGSNKKRAAKPKKKHAEPKSQPLEVPVEVPPVEEPTIKEEGQMGVCKCIVCRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00847667; iTF_00847989; iTF_00847990;
- 90% Identity
- iTF_00847667; iTF_00847989; iTF_00847990;
- 80% Identity
- iTF_00847989;