Kmac049960.1
Basic Information
- Insect
- Kuschelorhynchus macadamiae
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_030620095.1
- Location
- JAUTXW010001724.1:264210-279837[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-23 1.7e-18 69.9 3.8 218 300 97 177 68 177 0.89 2 2 0.029 2.1e+03 0.7 5.5 121 168 176 223 175 251 0.70
Sequence Information
- Coding Sequence
- ATGGGATCTCCATTAAGCCCTATTCTAGCCACTATCGTACTTGACTACCTCTTAGACAACATTATTCCCACATTACCTTTTAAATTTGCGTTAATTTATAAGTACGTTGATGATATTATTTGTGCGATACCAAAAGATTCCATCCAAACTACACTTAATATATTCAATTCTTTCAATAAGCATTTACAGTTCACAATTGAATGTGAAAGTGATCATAGCGTTCCTTTTCTAGATACCAGAGTTATAAGAATGgaagacaataaaataattttggactgGTATCAAAAACAAACATCTTCAGATGTACGATTAACAagttttacaaaagaaaaaatcgaGCTTCAAGATCAAATTAGTagtttaaaattagaattagaaGAAGAGCGAAATAGGCGAAGGAAATCTGGCTCCAGTAGTCTACTAAATGGACCCTCATCAGATTATGATCCTGATGACCTGCAAAgGGAGGCTAGCAAGCAGTTAGCAGACTACAAGTTTCGGGCACAGAAAGCAGAACAAGATGTTGCAACATTGCAAGCAACTGTTGCCAGGCTGGAAAGTCAAGTAATACGTTATAAAACTGCAGCAGAAATATCGGAACAATCCGAAGAAGCCTTAAAATCAGAAAAGAGGAAATTGCAGAGAGAAGCTAGAGAAGCGCAGAACCGAGCTGATGAACTAGAGACATCCAATACCCATCTGTTGAAACGCCTAGATAAGTTGAAAAATGCAAAATCGGCGTTACTAAAAGAGCTCTGA
- Protein Sequence
- MGSPLSPILATIVLDYLLDNIIPTLPFKFALIYKYVDDIICAIPKDSIQTTLNIFNSFNKHLQFTIECESDHSVPFLDTRVIRMEDNKIILDWYQKQTSSDVRLTSFTKEKIELQDQISSLKLELEEERNRRRKSGSSSLLNGPSSDYDPDDLQREASKQLADYKFRAQKAEQDVATLQATVARLESQVIRYKTAAEISEQSEEALKSEKRKLQREAREAQNRADELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -