Kgib009996.1
Basic Information
- Insect
- Kradibia gibbosae
- Gene Symbol
- -
- Assembly
- GCA_018907135.1
- Location
- JACCHX010000006.1:18029153-18034416[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.26 49 5.5 5.8 1 23 346 368 346 368 0.97 2 19 0.00044 0.083 14.2 0.3 1 23 417 439 417 439 0.98 3 19 0.015 2.8 9.4 0.5 1 20 494 513 494 515 0.94 4 19 0.011 2 9.9 2.1 3 23 557 577 555 577 0.96 5 19 0.0015 0.28 12.6 0.1 1 23 620 642 620 642 0.97 6 19 0.0003 0.057 14.7 0.1 1 23 648 670 648 670 0.97 7 19 0.0001 0.019 16.2 4.9 1 23 710 733 710 733 0.95 8 19 8.7e-05 0.017 16.4 0.4 2 23 741 763 740 763 0.96 9 19 0.0001 0.019 16.2 0.7 2 19 789 806 788 811 0.89 10 19 0.00027 0.05 14.9 1.5 1 23 842 864 842 864 0.93 11 19 0.027 5.2 8.6 0.1 2 20 922 940 921 940 0.95 12 19 0.074 14 7.2 0.2 2 23 959 980 958 980 0.96 13 19 0.0032 0.61 11.5 3.6 1 23 1000 1022 1000 1022 0.96 14 19 0.022 4.2 8.9 5.5 3 21 1043 1061 1042 1065 0.89 15 19 0.14 26 6.4 0.2 2 23 1124 1146 1123 1146 0.93 16 19 0.054 10 7.6 2.2 3 23 1176 1197 1174 1197 0.88 17 19 0.00059 0.11 13.8 1.0 1 23 1204 1228 1204 1228 0.96 18 19 0.039 7.4 8.1 2.5 1 23 1233 1256 1233 1256 0.94 19 19 0.0057 1.1 10.7 0.4 3 23 1288 1309 1286 1309 0.95
Sequence Information
- Coding Sequence
- ATGGACGACGTCGTTGAGGTCAGCGGCTTGGAAAATGCGTGCAGGTTGTGTCTTACAACCGAGCAAACGAGGTCGTCGATTTTCGGCGTACCGCACGTTAAACTGCCTTTCGTTGACAAAATTCGCGCCTGCTTGTCAATACAGATTTCATCTCATGATAAACTGTCTACCTTAGTATGTACAAATTGTATCAAGAATATAAATCAATGGCACTCTTACAAAGATACATGCCTGCGCTCTCAAGAGAAACTTCAACAATGGTTAGCAAAACAGAATTCGATTGTTCAACCAGTATTAATTGTAAAAGAAGAACCAGTAGATGTAGAATATCCGGATGAACCTACACAAATTGTGCCCGATGATTTAGACACATTTAATCCTATTGCATTTAATAATGAAACTTTGGGCAATGATGGTGAAAGTAATGCTACACCAGTTGTGAAAAAAATGGCACATGGATTATTAGAGGATCTTCCAGAAATAAATGATAAAGATCACTCTCCATTGATTCAAATTAAAATTGAACCTGTTGATACAGAAGATGAAGATGACTGTAACATAGATGTTGAATCTGTTAATAGTGGTGAACTGTTAATAAATCCAATGGCTGTAGTAGCTAGTGCTGGCAGTAACGATAGAATAATGGAGGCTGATTCAACGCAAAAATTTAATACAAGGAGGTTTGGAACAAAGAAGAGAATGCGACGCGGACCTCATACGCATTACAGGGGTATTCGATTATTTAAGAAAAAGTGTATTCACTGTAAAATTTATTTGCATTCTAAATACTCATATACTCAACATATGTCGAGATACCATGGAATTGTCAATAATTTATCTGGAGACTTTAATAAGCCTGCAGACCAGCCATTAATTAAAAAGCAAAAATCGAAACTTTCCTTCCATACAGATAATACAGAACCTGTTACAGATACACAAAATGAAACAAATAGCGAAGATTTGGAATTTGAAAAAATGATCAAGACTGATCCTCTAATACCAGTTCAAAAGACTATCATTAGCCAATTGAAGACCTTCTCCTGCTATTCCTGTAAGCAAACGTTTTTCGACCGAAGGCATACATTGAATCATATTAGACAGCATATGCCAGACCTGAGGCCATTTACGTGCATAGCATGTCTCACCGAATTCTCTGATAGGTCTATGTATAAGCTTCATTGCGGTGCTTCCTTTGAATGTGCTATGAAAATAGCTCTCGTTGTACCAAAAGTAGGTAATGAGAAATATTTTACCTGTAATATGTGTCTTCGTCCATTTGACAATCGTAAGGAGCTACTAACCCACTTAGCAGTACACGCGGATAAGCAATACCAACAATTAGTTCAGCCGGTAAGGTCTCCACCGAAACTAAAGCCAATAAATCCACCCATATCACCTCCCGAGTTTGATTCATCGCCCGTTAAGAAGCCAGTCATCACTGTATCTGGACCTTATATGAATGGTGATCCAGCCCACAATCATACGTGTGATTTATGTGGTATGATTTATAGGTATAGACCCAATATGTTCAAACATCGTGAGCTTTGTTCTACTTTACCTGAGAACATAAGAACATCATATAGATGCATCCATTGCAATATGACGTACCTCGTGTACAAAAAGTTTTATACGCACGTATTCCACGACCATAAAAAACGCGAAATTATCTGCTTTACTTGTCATGAGAAATTTACTACTCCTGACGACTATCTTGGTCATCATGAAACACATCGTGTCCACATAGATAAGGAGAACGTCGACGAAACTGCTAATGACAAGCAGTCTGGAATGGGATTTTCTATAGGAATAAGTCCACTAAATTCATCAACGCATCCTTTGGACACCAATGAGAAGCCCTTCAATTGTGCCCTTTGCGGCGAAGATTTTGCTACGAAAATTGAACTATCGGAACATCGCAACCTTCATCTCAAAGTAAAGATTTACTCGTGTGTCATTTGTCGTAGCATGTTCAGCAGTTCGGGAGCCTTAGAAGTTCATATGAAAGATCACGGGATCGAGGATCCGGGTGAGCAAAATGCGAACAGTTCGTGTGTAGAATATGGACGTGAAAGTCGCTCGCAAGCTGCAATAAACGATTCTTCTACCTCTGATCCAGGCGGATACTTCCATCATTGTTACGAATGTAATAAAAATTTCTCTAATCTTGCGAATTTAAAGAGACACGAGCGAAATTTGCACTCTAAGCAGAGACGACGTTGGAGTTGCGATGATTGTAAGAGACGCTTCAAGTCACTTGAAGCTTATAACGAGCACGTGAGAACAGAACACAGGCCTGGACAACAATCTTATGACAAGCCTCCGCCACTACCACTGCTGTCTTCGACGACCGGGAAGCCGCTGATGCAATGTCCGAAATGTCCCAAAACATTTGCTTACCAGGGCAACCTCATCGTTCACTGCCAAAACGTTCATAAGGAGAATCACTTCGAGCGTGCGCGAGCGAACGCTGCTCGACCGGTTGCCGCTCTTCCCCGTCCAGTCACGACTATGTCCTCGTGGGGACACTCGTGCGATCTCTGTGGGAAAACTTTTCGCGAGGAACAATCTCTCAAGACCCATCGGGGTTGGCACCTTCGCTCGACTTACCGGCTCAAGGTGGACAAGAACGCGAGTCTCGACGAGGCGACGCTCAGCGGGCCCGGATATACGATGACGATGACAAGCTCCGCAAAGCCCGCAAAGGCGCGTAAGTCCTTTCCTAACAATCCGACTCAGAAGCAACTCGGGACGATTGCGAGCTTGCAGTGCCAAGTCTGCGACGATCGTTTCACGGACGTTGCCGAGCTGAGGAAGCACCTTTGGGATGTGCACTGTGCCCGGAACAAGCCTGAGAAGTCATTTACGAGTGAGTTGCAGTGCGAGCTTTGTACGAACAAATTCCTGGATGAGGAGTCTTTGGAGAGCCATATGCAGTGGCACTCGCAGAATCCGATACTCGGTGGCAGTGGTAGCAGCTTCGAAGGCTCTACTAAGACTTTTTTCTGCGACACCTGCGGCAAGTACTACAGCAGTCGGAAGCTCTACCTGCGTCACAAGAAGCTCCACAAAGTATTGCCCGCGACGACGACGATGAACCTCCAGTCGCTGCAGACAAAACGGCCGTTCTGCCACTCGTGTCAGAAGAGTTTCTCGACGGACGCCTCGCTCAAGCGGCACAAGGCCTCTTCCTGTCACCACAGCGTTGTACGCTTCCAGAGCCAGCAGGGACCGAAAAAGATAACGACGACGGCCCTCGTGCACGAGCCGCCAGCGGAACCCGTTCGACTTCAGTCCGTTAAACGAGAGCCTGGAATCGAGTACCTTGGCAGCGGACAACTCGGTGGTCCAGGTTCGAGGAAGAAGCCGGTCACTTGCCTCATATGCAAGACCATATTTCCAAACATGAGCGTCCTCTACCAGCACAAGCAGCTCGTGCACAAGCTACCAACGAGCGGGAGGGATAGAGCCAACATCCAGCAGCAGGCCGAGTGCATACCTTTGGTTAGTGCCGAAGGTCTCGTGTGCTGCAACCTCTGCGGCAAGCAGTTCCCCGGAGTGCCCAACCTCAAGCAGCATTTCGCCCACAAGCACAAGGCCAAGAGCTCGACCTTCCCTTGCAAGTCGCCTGGCTGCAAGCTCGTCTTCAGCAGCGCTCACTCACTCAAAAGCCACGAAACGACACACTCCAGTATGATATACAATTGTCACCTCTGCGACGGTCACGTGTTCTCAAGGGCTGCTATGACCAAGCACATGATGACCATGCACAAGGCGATATATCAGTCCGGGGCTAGCAAGACTAGTTTGTGGTCCGAGACCGACCTTACCACTTACAACGTAAAGAACTGTCAAAGCACCGCCTGCCCCAAATGCAAAATCAAATATCCAAATCTGAGAGCACTCAAGATCCACTACCTCAAATTCCATGAGAAAACATAA
- Protein Sequence
- MDDVVEVSGLENACRLCLTTEQTRSSIFGVPHVKLPFVDKIRACLSIQISSHDKLSTLVCTNCIKNINQWHSYKDTCLRSQEKLQQWLAKQNSIVQPVLIVKEEPVDVEYPDEPTQIVPDDLDTFNPIAFNNETLGNDGESNATPVVKKMAHGLLEDLPEINDKDHSPLIQIKIEPVDTEDEDDCNIDVESVNSGELLINPMAVVASAGSNDRIMEADSTQKFNTRRFGTKKRMRRGPHTHYRGIRLFKKKCIHCKIYLHSKYSYTQHMSRYHGIVNNLSGDFNKPADQPLIKKQKSKLSFHTDNTEPVTDTQNETNSEDLEFEKMIKTDPLIPVQKTIISQLKTFSCYSCKQTFFDRRHTLNHIRQHMPDLRPFTCIACLTEFSDRSMYKLHCGASFECAMKIALVVPKVGNEKYFTCNMCLRPFDNRKELLTHLAVHADKQYQQLVQPVRSPPKLKPINPPISPPEFDSSPVKKPVITVSGPYMNGDPAHNHTCDLCGMIYRYRPNMFKHRELCSTLPENIRTSYRCIHCNMTYLVYKKFYTHVFHDHKKREIICFTCHEKFTTPDDYLGHHETHRVHIDKENVDETANDKQSGMGFSIGISPLNSSTHPLDTNEKPFNCALCGEDFATKIELSEHRNLHLKVKIYSCVICRSMFSSSGALEVHMKDHGIEDPGEQNANSSCVEYGRESRSQAAINDSSTSDPGGYFHHCYECNKNFSNLANLKRHERNLHSKQRRRWSCDDCKRRFKSLEAYNEHVRTEHRPGQQSYDKPPPLPLLSSTTGKPLMQCPKCPKTFAYQGNLIVHCQNVHKENHFERARANAARPVAALPRPVTTMSSWGHSCDLCGKTFREEQSLKTHRGWHLRSTYRLKVDKNASLDEATLSGPGYTMTMTSSAKPAKARKSFPNNPTQKQLGTIASLQCQVCDDRFTDVAELRKHLWDVHCARNKPEKSFTSELQCELCTNKFLDEESLESHMQWHSQNPILGGSGSSFEGSTKTFFCDTCGKYYSSRKLYLRHKKLHKVLPATTTMNLQSLQTKRPFCHSCQKSFSTDASLKRHKASSCHHSVVRFQSQQGPKKITTTALVHEPPAEPVRLQSVKREPGIEYLGSGQLGGPGSRKKPVTCLICKTIFPNMSVLYQHKQLVHKLPTSGRDRANIQQQAECIPLVSAEGLVCCNLCGKQFPGVPNLKQHFAHKHKAKSSTFPCKSPGCKLVFSSAHSLKSHETTHSSMIYNCHLCDGHVFSRAAMTKHMMTMHKAIYQSGASKTSLWSETDLTTYNVKNCQSTACPKCKIKYPNLRALKIHYLKFHEKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305786;
- 90% Identity
- -
- 80% Identity
- -