Kgib032054.1
Basic Information
- Insect
- Kradibia gibbosae
- Gene Symbol
- -
- Assembly
- GCA_018907135.1
- Location
- JACCHX010000005.1:18080032-18095042[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 5.3e-06 0.001 20.3 1.0 1 23 360 382 360 382 0.98 2 30 0.0023 0.43 12.0 1.9 1 23 405 428 405 428 0.96 3 30 0.00011 0.021 16.1 0.5 2 23 435 457 434 457 0.96 4 30 0.00062 0.12 13.8 0.9 1 21 477 497 477 498 0.94 5 30 0.00039 0.074 14.4 0.1 2 23 604 625 603 625 0.96 6 30 0.012 2.3 9.7 0.3 1 23 631 654 631 654 0.91 7 30 0.0001 0.019 16.3 0.1 1 23 723 746 723 746 0.96 8 30 0.02 3.8 9.0 0.4 1 23 752 775 752 775 0.96 9 30 0.1 19 6.8 1.5 1 23 788 810 788 810 0.97 10 30 3e-05 0.0057 17.9 0.9 3 23 854 875 853 875 0.96 11 30 1.1 2e+02 3.6 0.8 2 23 938 961 937 961 0.93 12 30 2.6 5e+02 2.3 0.0 2 23 970 992 970 992 0.84 13 30 0.094 18 6.9 0.0 2 23 999 1021 998 1021 0.94 14 30 1.1e-05 0.0021 19.3 1.2 1 23 1029 1051 1029 1051 0.98 15 30 0.00018 0.034 15.5 3.3 1 23 1134 1157 1134 1157 0.97 16 30 0.014 2.7 9.5 0.5 2 23 1164 1186 1163 1186 0.95 17 30 0.0006 0.11 13.8 4.8 1 21 1230 1250 1230 1251 0.94 18 30 0.0023 0.43 12.0 1.8 2 23 1265 1286 1264 1287 0.93 19 30 0.67 1.3e+02 4.2 2.6 1 23 1290 1312 1290 1313 0.95 20 30 0.021 3.9 9.0 0.7 2 23 1320 1343 1319 1343 0.91 21 30 0.81 1.5e+02 3.9 0.2 2 23 1351 1373 1351 1373 0.95 22 30 3.1 5.8e+02 2.1 0.0 2 23 1380 1402 1379 1402 0.87 23 30 0.19 36 5.9 2.7 2 23 1411 1433 1411 1433 0.96 24 30 0.22 42 5.7 0.8 2 23 1439 1461 1439 1461 0.93 25 30 0.035 6.7 8.2 0.3 1 23 1528 1551 1528 1551 0.96 26 30 0.026 4.9 8.7 2.0 1 20 1580 1599 1580 1601 0.91 27 30 0.27 51 5.5 1.9 2 23 1689 1711 1688 1711 0.94 28 30 3.4 6.5e+02 2.0 0.9 2 21 1718 1737 1717 1740 0.94 29 30 0.14 27 6.3 1.8 1 23 1751 1773 1751 1773 0.97 30 30 0.0078 1.5 10.3 0.2 1 20 1780 1799 1780 1801 0.95
Sequence Information
- Coding Sequence
- ATGGAGCAGGAACGAATATCCTGCAGGTTGTGCGCGAATAAAAATTTTAGGAAGGCGCACGTTAAGTCGATCCCAAGAGGCGACCTCGCGAGCCTTACTTGCAGCTCCTGGTCGAAGGAAATAGGAGGCGAGCGAGTCCTCCTCGCCGATGCGCGTAAACGAGCAAATGTAATGGCCACGCGCACCTTGACCCATATGCACGTTGTCAAACGTACGACCGATCGCCTCGCAAGCACATGTGTGATCGCTAGTTTATGCCCGTTGTCCGCGCAACGTACACCAGGAGGGTGGGGCAAGATCGGACCTTATCTTGCACCAGAGCCAAAACCCCCAGACTCTCATCCTTGCGGCGCTGCTGCTCAACCCCGGCGAACGTTGGCTGCGGCCTCGCTGCGACTGCTATTATCATTATTATTGTTGCGACGCTCCGATGAGGCCCGTCTCTCGTTGCGCAAGACGCTGCCGATTTTCGCGGAGATAAGCTCGCGTTTTGCAACGCCCGGGACCAACGAGATTATACGCGCGTGTCTGCCTGTCTCCACTACGGAGGATGACAGATTGCCGAAATGCCTTTGCTACAGATGCATGTATAATTTGGAAAATTTCTACGATTTTAGAACGGCTTGCGTCAATGCAGTCGCTCTATTGGAAAGATGTTTACCACCGGAAGCGACGAAGACGCAGATCAAGCAAGAGGGTGAAGACGTAGAGCCATATTCAGAGCTACGAATGGAATTGTTGAAGGAAAAGGAGAATATGCCGATGCTCATCCCCGAAGCGTCCATCGTCAATCCCAACGCAGCCCTTGGCACCCCACCGAGACTCATGTCCGACGGGGAGCAGGAGCACGATATGGAGGATCTCACCCACCAGCATGACATGGGTGACGGACGAATGGACGACCAGGACGATCACAAGTCGGACGAGTACGAGATGGATATGGAAACGAATCCTAGCGATTTCCTAGAAATGAGCGCAATGGTGCCGGAGGAGGAACACGTACTGACCCAAGGGCAGGTTCTCGGGCATCAGCAGGATACTGGCGTCTTCCAGCATCGCAACGAGCAACACGAGGTTTACGTCTGTTCGCTCTGCAACAAAGCCTTCAGCTCTAAGGGCCACCTGTCGCTCCACGCGAGGATACACGTAGGCGCGGGCGACGTCATCGGTGAGAAGGTCATCACGGACGACCACACCTCCTACAAGAGGCCGTACCAGTGCGACCTATGTAACAAGTCCTACTCCACGGCCAAGCATCGCTGGGGACACGTGTCCACGACGCATCGTGGTCATCCTGCGGTGACGTGCGGCTACTGCTCGCGCATCTACTCGACCCGCACGAATCTGGAGGAGCACATAAAGTCCCGACACGCGGGCTTGCCGCCGCCTCCCGAAATGCCGGTCCCCTATATACAACCGGACTCACGACACCAGTGCAAGACTTGCCCCAAGATGTACACCAACATCACGGACCTCAACAAACACAGTCGAGTCTGCCTTGGGGAGCAGCAGCGCAAGGACATGATGGCCAACAACAGCATGAACTCCCAGAGCTTCGCAAAACTAAAAAATGCTTTGGAAACAGCATCAGATTTATCCAGTATTGATTCAGATTATGAGAACAAAGATTATAAAAGTGCTGAAGCAAAACTTGCCAAAAATCCTCAATTGACTATTCTTAAACAGGCACTTATCAAGGGCGAGAGTGTAAAAAAGGAATACGAGGAAAGGCAGAAGATGCTGAGTAAAGCAAAAAAACAAGCAAATGCATCTAATAAAGAGCTGACTAATACTGATGCTAAACGGTGGTACTGCGAGGTTTGCCCCTTAAACTTTGCGACTGCTGATGATCTGCGACAGCACGAAAAGAGCCACGATGCCGACAAACCTTATATATGCATTTTATGCGAAAAGGATTTTGTCCTAAAATCATCTTTGAGTAGGCATATTCTTTCTTCTCACGGAGTTGATCCGACTCCACTTGTCGAAAGCGATAAATGCTTGAAAAAGGTTATGCAAGATGGAAATCCGCAACCTGTCTTGATAAAAGAGGAACAAAATGTTACCAAAGAAACTTATACATCGCCGTTTTCTCCTGATAATATGGATAATGACGATGACGAACAAGAAAACGGAAATGATAACATGCTCGAAATAGAGACAGTATTTGTTTGCGAAATCTGCACACGAGATTTTAATGATAGAGCATCACTTTGGTTACACATTCGTGCCACTCATAAAGAGTATGCTGCATTTGCTTGTGGAGTTTGTTTAAAAATATGCTCGGATAATATACAATTATTAAACCATGTGAACATGTATCATGGAGGTTCAAAGCTCTTGATGTCCGAACAACGAAGGTATAGCTGCACGATATGTGGAAGGCAGCATGATTCACGCAAAAAATTAATAACTCACGTGTCAATTCACAACGTAGATCCGGGATATGACCCCGCGAGCTTTGTACAATTAAATACCAATTATTATAATGAAAATGTAAACAGTAATGAAGGAAATGATCTTATTATGGACTGTGACGATGAGAGCGAGAAAGTGGATTGTTACATTTGCTATAAATCATTTCCGAACGAGGACCACCTCATACGCCATCAAAGGAATGCTCACAAGTCCGAGCAGATGGTTCAAATGGGCGAGTTCGGTGGCAACGGGACAGCCGGTGGTCAGAACGGCAACGGCAATCGTGCCCAGTACCATCTTTTCTTCGTGTGCGAGCTTTGCGGAAACTCTCATCCTAGTAAATGGGAGCGCTGGCTTCACGTCAGCAGTGTGCACAACAATGAGCCTTCCATAAGATGCGAGCGGGACGATTGCGCCAAGATCTTCGCGACTAAGACTCTACGTAACGAGCACGCTCAGCATCACCAGCTGCAGGGGAGCTCGCCCAATACTTGTGAGATATGTGGCAAGCTTTGGGGTAGTCGAGTCGACTACTGGAAGCATGTGATGGGCGTACACTCGGATACGGTGCCCCTCATATGTGGTGTCTGCCTCAAGGTATTTCCGGACGTGCTGCAGCTCAGTCAGCACGTAAAAATCAAGCACTGGCCCCTTACAAATGGTGACTTCAGCTGCGATATATGCGGCAGACCGTATTCAAACAAAAGCAAAATGTCGAGGCATAGAAAGATCCACGGGTTAGATGGGGAAGCCTACAATCCGGCTGCGACCAATAGTAGTCTCATCATCAATGATGCATCGACGAACGATGCATCTGATACTTATGAAAGCTCGGGACTGCCGATACCGTTACAACTAGATAATGGATTGCCACAGCCCGTGGAGACGGCCTCGATAGATCTAAGCTGCGAGATGTGCGGCGATCTTAAATTCCCGTGCCTGGAGGACCTATGCAATCACCGACGCATGGCTCACAGCCTCTTCCCTTGCGACCTCTGTAACAAGTGTTACGGCCGTACTTCGCACCTCTGGAAGCACGTGAACCGCGTTCACAAGGGCCACGAAGACGTCACCTGTCGCTTTTGCCTCAAGACAAGCGCCTCTAAAGATCACCTCGCGGCTCACATTGCCAAGATACACCGATATGAGCCCGAAATCAAAAGCGAGGCCCGGGACATCATGAGCTACAAGGGCTGTAGTTACAATGTAGCCGCTGCTGCTGCTGCCGCCGCGGCCGCAGCCGCCGCCGCCGCAGAGGACGACGTACTTCACTTTTGCGAGAAGTGTAACAAATCCTTTCATAAGAGGTATTTGCTGCGACGCCATATGAAGGGTTGTCAGAACTACCGGAAGGACCCAGGGGCCTTGCTGACACGCTGTCGTGCTTGCGAGCGCATATTCAAGGATCGGGCGAGCTTGCAGAAGCACATTGAGAACCACCATAGCTCATACGAGTGCCATCTATGCAAGGAGACCATAACGTCAAAGCTCGGCATAATGACGCATAATCGCGTGCATCATATGCTGCATCCAGACCTCACGTGCGAGCTCGACAATTGTCGCAAACTCTTTAGAACGAAGGAGGACCTGGAGTCCCATCGTACGGATCACAAGCATCTTGGAATCCCGAACGTCTGCGACTTTTGCGGTGACACTGTGGAAAATAAGCTCAAGCTCAAGATGCATATTCTAAGCCTACATAGGAACGAAATTGGCGTTTCATGTGGTGTTTGCCTCATACCTATGAAAGATCCAAAGGATCTTAAAAAACACGTTGAAGATGTCCATGATAGTGTACTCTTGAAACCGAATACCTGCCAGGTATGCGGCAAGCAGTACGCATCAAAGTGGAAGGCCTTCGACCATACGAAGAAGTGCCATGGGAAGGTGTTCCGCACGTGCAAGCAGTGTCTCGCCGTTTTCACTTCCGACGAGGACCTGCGATACCACTATGAGCACATACACAACATTCCGAAGGACCAGCTGGATGCGTTTCAGTACAGGCTGGAGGTGTCCGGCATTAAGATGGAAGACTATGACCTTGGACCTCTCGAGGTCGTCGTCAAGGAGGAGCCCGAGGAACTCGATTTCGACATGGAGCCCTTCGACGAGGACAACGGTAACTCCAACGATTCGAAGAGGCGACGCTCTATCGGGGATACCTACGACTGCGAAATCTGTCCGGAGATATTCCTGAACCACGAGCTCCTCTCCTCCCACTACCGCAACGTTCATAATACCGACCCCACGCGAATGTTCAAGAAGATGCGCCTCGAGCCCGCGACCAAGGCCAAGAAAAAGACTCGCGACCGCGAGAACTATGAATGCAAAAACTGTCAGAAGCAATTCTGCACGAAAACACTGTACCTGGGACACGTGAGCGTATGTACCCGCAGGTCATCGTCGATCCTCGAGGCCCACCTTAAGAACAACAACCAAGTTAAGCGGGAGGAAATCGAGTCCATGCTTTGCGAGACGAACTTGAACATCCCCGACTTCAATCTCTTTGAGGACATAAATATGCAGTTATCGGGCCAGAAGCCGGTCCCGAGTCTCATGCCTCTCGGCCTCAACTCCTCCAAGGTCTCCAAGTATTCGAGGAAGGACTCGCGCAAGGTCTATGACGAATCAACCAATACCGAATGCACTTGCGAGGTCTGCGGCAAGCAGTGGCCGGCTAAGAAACACCTTTGGCAACATCTGATCAGGTTCCACAGGGCCGAAGCCGCCGTCACTTGCGGAGTCTGCCTGAAGCTCTGCGCCACTTACGAGGATCTCGCGGAGCATCTCCGCTGCGCCCATCCAGCTATTCTCTCCACTGCGGGCAACAACTTCACTTGCAAGATATGCGGTCGCTACCACAACGCCAGGAGCAAACTCCTGCTCCACATGAGTATCCACATCAACTGTGCGGCCAATTTCATGTGCCAACGCTGCAACAGAAGCTTCGAAAACGACGAAAAGCTGAAAGAGCATATCGGCGTCTGCCTCGGGACTCAGACCGACGATCAAGGGCAAGACAAGCCAGTGAAGGAAGAAGGCGAAGAGAAGGACGAGGAGGAAGAGGCCGAGACCGCCGACGAAAAGACTAGGTACGAAGCTATGTCTGAATCGGACGATGAAGAATATGTGAAAAAGAAGAGAGACAACGTTATCGCAAGTTACTCAGACGACGATGGTCCCCCGGCCCTGAGCCAAATTATGCCGTTTACAGAGGCGCAAGGCTTAGTCGAGCAGCAGGAAAACGATAGTCAGGACGAATTAAGTGCGCGGCATCGCACGCTCAGTAATTCCGTCAGCTCTAAGAAGGAGAAGAGCGAAGAGAGCGAGGAAGACAGTAGTGAAGTGGAGGGGGTTGAGGAGGATGAAGAGGAGGCTGAGGAGGCAGAGGAGGCAGAGGAGGCCGAGGTCTCTGAGGAAGAGGAAGAAGTGCATCGGGCTGAGGTTGTTGATCCCAACAGCGCTTTTCATGCAGATAACAACTCAAGGAGCAGTAATGAAGTTGACGAGAACGATATGCATAATCTTAATGGCACCGTCCTCATGCTTACTAATGACGCGGATGGTAATCAAATTCTCATTGAGCGTAACATGGCTGACCTTGAAAACGACGATTCGGTTCACGACGTGGCACAATACGTATTCCAAGACGGTACAGGCTTTGCCCTCGAGGATTACGAAACCATCGTCGAGAACCAGGGTGACGAAGAAGAAGAGGAACAGCAGCAACACAATTTTGAAGTAGAGATCGGTAATGTGCAGGAGGAAGACCTCGACGAGCAGGGAATGGTAGAAGAGGAAGATGACGAAGGGGAGGATGAGGAGGAAGAACAAGAGCAAGACGATCGAGAAGAGATCCAAGAAGAGGAGCAAGATGAAGATGAGATCAGCTCTAGTGCCAAAAGCTAA
- Protein Sequence
- MEQERISCRLCANKNFRKAHVKSIPRGDLASLTCSSWSKEIGGERVLLADARKRANVMATRTLTHMHVVKRTTDRLASTCVIASLCPLSAQRTPGGWGKIGPYLAPEPKPPDSHPCGAAAQPRRTLAAASLRLLLSLLLLRRSDEARLSLRKTLPIFAEISSRFATPGTNEIIRACLPVSTTEDDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLPPEATKTQIKQEGEDVEPYSELRMELLKEKENMPMLIPEASIVNPNAALGTPPRLMSDGEQEHDMEDLTHQHDMGDGRMDDQDDHKSDEYEMDMETNPSDFLEMSAMVPEEEHVLTQGQVLGHQQDTGVFQHRNEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPPPPEMPVPYIQPDSRHQCKTCPKMYTNITDLNKHSRVCLGEQQRKDMMANNSMNSQSFAKLKNALETASDLSSIDSDYENKDYKSAEAKLAKNPQLTILKQALIKGESVKKEYEERQKMLSKAKKQANASNKELTNTDAKRWYCEVCPLNFATADDLRQHEKSHDADKPYICILCEKDFVLKSSLSRHILSSHGVDPTPLVESDKCLKKVMQDGNPQPVLIKEEQNVTKETYTSPFSPDNMDNDDDEQENGNDNMLEIETVFVCEICTRDFNDRASLWLHIRATHKEYAAFACGVCLKICSDNIQLLNHVNMYHGGSKLLMSEQRRYSCTICGRQHDSRKKLITHVSIHNVDPGYDPASFVQLNTNYYNENVNSNEGNDLIMDCDDESEKVDCYICYKSFPNEDHLIRHQRNAHKSEQMVQMGEFGGNGTAGGQNGNGNRAQYHLFFVCELCGNSHPSKWERWLHVSSVHNNEPSIRCERDDCAKIFATKTLRNEHAQHHQLQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVLQLSQHVKIKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDGEAYNPAATNSSLIINDASTNDASDTYESSGLPIPLQLDNGLPQPVETASIDLSCEMCGDLKFPCLEDLCNHRRMAHSLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRFCLKTSASKDHLAAHIAKIHRYEPEIKSEARDIMSYKGCSYNVAAAAAAAAAAAAAAAEDDVLHFCEKCNKSFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSSYECHLCKETITSKLGIMTHNRVHHMLHPDLTCELDNCRKLFRTKEDLESHRTDHKHLGIPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDVHDSVLLKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTSDEDLRYHYEHIHNIPKDQLDAFQYRLEVSGIKMEDYDLGPLEVVVKEEPEELDFDMEPFDEDNGNSNDSKRRRSIGDTYDCEICPEIFLNHELLSSHYRNVHNTDPTRMFKKMRLEPATKAKKKTRDRENYECKNCQKQFCTKTLYLGHVSVCTRRSSSILEAHLKNNNQVKREEIESMLCETNLNIPDFNLFEDINMQLSGQKPVPSLMPLGLNSSKVSKYSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCATYEDLAEHLRCAHPAILSTAGNNFTCKICGRYHNARSKLLLHMSIHINCAANFMCQRCNRSFENDEKLKEHIGVCLGTQTDDQGQDKPVKEEGEEKDEEEEAETADEKTRYEAMSESDDEEYVKKKRDNVIASYSDDDGPPALSQIMPFTEAQGLVEQQENDSQDELSARHRTLSNSVSSKKEKSEESEEDSSEVEGVEEDEEEAEEAEEAEEAEVSEEEEEVHRAEVVDPNSAFHADNNSRSSNEVDENDMHNLNGTVLMLTNDADGNQILIERNMADLENDDSVHDVAQYVFQDGTGFALEDYETIVENQGDEEEEEQQQHNFEVEIGNVQEEDLDEQGMVEEEDDEGEDEEEEQEQDDREEIQEEEQDEDEISSSAKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305772;
- 90% Identity
- -
- 80% Identity
- -