Kgib002228.1
Basic Information
- Insect
- Kradibia gibbosae
- Gene Symbol
- pax6
- Assembly
- GCA_018907135.1
- Location
- JACCHX010000003.1:4312192-4314895[+]
Transcription Factor Domain
- TF Family
- PAX
- Domain
- PAX domain
- PFAM
- PF00292
- TF Group
- Helix-turn-helix
- Description
- The paired domain, a ~126 amino acid DNA-binding domain, is found in eukaryotic transcription regulatory proteins involved in embryogenesis. Initially identified in Drosophila’s paired (prd) protein, it typically resides in the N-terminal region and may be followed by an octapeptide, a homeodomain, or a Pro-Ser-Thr-rich C terminus. Paired domain proteins act as transcription repressors or activators, with DNA-binding specificity mediated by three subdomains. Crystal structures reveal a bipartite DNA-binding paired domain: an N-terminal subdomain (PAI) and a C-terminal subdomain (RED), linked by a flexible linker. Both subdomains contain a helix-turn-helix motif that binds DNA's major groove, while the linker may bind the minor groove. Variations in domain usage across Pax proteins and isoforms determine sequence specificity.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.1e-70 2.4e-66 222.2 0.1 1 120 11 130 11 136 0.98
Sequence Information
- Coding Sequence
- ATGGAACACAAAGAGTACAACATGATTTCAGGTCACAGCGGTGTGAACCAGCTCGGGGGTGTCTTCGTCGGAGGCCGGCCACTCCCCGACTCGACCCGGCAGAAGATCGTCGAGTTGGCCCACTCGGGCGCGCGGCCCTGCGACATCTCGAGGATCCTGCAGGTCAGCAACGGATGCGTCTCCAAGATTCTCGGCAGGTACTACGAAACTGGCTCGATAAGGCCCCGGGCGATCGGTGGCAGTAAGCCCCGAGTTGCCACCGCCGAGGTCGTTAATAAGATCTCGCTGTACAAGAGCGAGTGCCCCTCGATATTCGCCTGGGAGATTAGGGACCGCCTCTTGCAGGAGGGAGTTTGCACCAATGACAACATCCCCAGTGTGAGTAAACTTGTAAATCATTTGTTCTTGCGTGTAGTACAAGGATCCGAGAGTACGAGCCCCAACTTGCGTTAA
- Protein Sequence
- MEHKEYNMISGHSGVNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATAEVVNKISLYKSECPSIFAWEIRDRLLQEGVCTNDNIPSVSKLVNHLFLRVVQGSESTSPNLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00969557;
- 90% Identity
- iTF_01213991; iTF_00305009; iTF_01466161; iTF_01213270; iTF_00734521; iTF_01468794; iTF_01467044; iTF_01523978; iTF_00877802; iTF_01065517; iTF_00309455; iTF_00691038; iTF_00690128;
- 80% Identity
- iTF_01523978;