Klyc005320.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Keiferia lycopersicella
Gene Symbol
-
Assembly
GCA_029255805.1
Location
JARACZ010000003.1:14817421-14828645[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.00015 0.012 16.9 2.8 1 23 199 221 199 221 0.98
2 28 0.0011 0.089 14.2 2.0 2 22 252 272 251 272 0.93
3 28 0.0027 0.22 12.9 0.9 3 23 316 337 314 337 0.95
4 28 0.94 78 4.9 3.7 2 23 388 410 387 410 0.94
5 28 0.0032 0.27 12.7 0.2 1 23 424 446 424 446 0.96
6 28 0.1 8.5 7.9 2.9 1 20 490 509 490 511 0.90
7 28 0.0002 0.017 16.5 1.3 2 23 554 576 553 576 0.96
8 28 0.024 2 9.9 0.6 1 23 626 649 626 649 0.97
9 28 0.001 0.087 14.2 2.6 1 23 706 728 706 728 0.97
10 28 0.014 1.2 10.7 5.3 2 23 740 761 739 761 0.96
11 28 0.026 2.2 9.8 1.2 2 23 773 794 772 794 0.96
12 28 0.0009 0.075 14.4 0.3 1 23 804 826 804 826 0.98
13 28 0.0018 0.15 13.5 2.7 1 23 853 875 853 875 0.98
14 28 0.00049 0.041 15.2 1.7 1 23 886 908 886 908 0.97
15 28 5.2e-05 0.0043 18.3 0.4 1 23 916 938 916 938 0.98
16 28 0.0028 0.23 12.9 0.3 2 23 958 980 957 980 0.97
17 28 0.21 18 7.0 3.4 1 23 998 1020 998 1020 0.96
18 28 0.015 1.3 10.6 0.6 2 23 1061 1083 1060 1083 0.94
19 28 0.0045 0.37 12.2 0.3 1 23 1104 1126 1104 1126 0.97
20 28 6.6 5.5e+02 2.3 2.6 2 23 1169 1191 1168 1191 0.84
21 28 0.19 16 7.1 2.0 3 23 1208 1228 1206 1228 0.93
22 28 1.4 1.2e+02 4.4 2.5 5 23 1238 1256 1235 1256 0.93
23 28 0.005 0.41 12.1 0.9 2 23 1267 1289 1266 1289 0.96
24 28 3.3 2.8e+02 3.2 1.1 3 23 1307 1324 1306 1324 0.80
25 28 6.5 5.4e+02 2.3 1.3 2 20 1328 1346 1328 1348 0.87
26 28 0.62 52 5.5 1.4 2 23 1397 1418 1396 1418 0.92
27 28 0.0055 0.46 11.9 1.1 2 23 1429 1451 1428 1451 0.97
28 28 3.9 3.3e+02 3.0 4.4 2 20 1489 1507 1482 1509 0.88

Sequence Information

Coding Sequence
ATGGCCCTCAAGTTGGGAAAATGCAGGCTTTGCCTGAAGCTTGGGGACTTTTATTCCATCTTTACGATGGACAACTCTCTTCAGCTTTCCGAAATGGCTATGGATTGCGCCCGAAtaaagATCTACGAGGGCGACGGTCTTCCCGACAAGATCTGCTCGGAATGCGTCCAGAAACTTAGCAGTGCGTACATCTTCAAGCAGCAATGCGAGCGTTCCGACACCGAGCTACGGCGGAACTACGTGCCTCCACCAGGATTCAGCGTCACTCCACCCCCACCAAACCGACAAAGCAGCGATTCGGCCTTTTCATCCGCTAACACTGATTTGTCGTACCACAAGCCCCCTTCCACCGAAAAAGTAACACCACTCAACCGCGCACGCAAGAGGAGCCGAGAAAGCATGGACGAATCCGTTAGCAGTCGATCCCACGACTACAACCCTAGACCCAGCAACTCTAAACGAGTCGAAGAACTAAGGACCACGAACAAAAGACCCCGCAACCATTCCCCCAACGCCTCTCTCGATTCTGATTACGAAGACACCAGCTACTCCCATTACTCTCCCGGGACTGATTCTGACGAACCACTAATCTCACATAAATGCAAACAATGCGGCAAAGATTTTCAATCATCGATGAGTCTCCGAGGTCACATGAAAATTCATAAACAGAAAACCAGCCTTGCAGCTGACGATGCCGTCGTAAAAATACCCCGAAAGAGTATGGAAGACGCTAAAGATTCGGAAGACAAATTGTCCTGCGACAAATGCCATAAAACATTCAAGCTGAAAATAATGCTGAAACGTCATCAAGAGACATGCGTAATTGCGTCGGATTATCCACAGTTAAACAAAGAACTGATTATTTCTTTAGAACCTGTTGACGGGGTGGTATCTCCAAAAAAGGATAGACCAGTCGATCCAAACAAAAAATCCGATCGGATCAACTGTGAAATGTGCAGTGCGAACTTCAAAACCTTCGATAACATGGAGAAGCACATGAAATACTCACACGCCGCTATTCCTAAACAGCCGAGACCTGTTCCGCCCAAAGTCGAGATGATCAACTTCCCGTGTCTGTATTGCTGTGTTCCTTCTGATAATTACACTGCGATGGCTGAACATTTCAACGATTGTTCTAAAAGGGACGATACGTTGCCTTTGAAGTGCCCCGTTTGTCACAAGATCATGACGAAACGACACACGTTCCTGTCCCACGTGAAGCAGATCCACTTCTTCGTGGTGTCTAAGCAGGAATCTCCCACGAAGACATTCGACTGCCGAATGTGCGACAAGAAGCTTGCGTCGCAAGACTTGCTTATTTCGCATTTGGCGTCACACATGTCTAACGTGGAAGAGCCTGCTGAGGTTCCTGATGACGATGCTGGATATACTTTCAGAAGCGTGGCTGACGACAATCAGTCGATGCAGTCGGACTACACTGCCAGCTCTTCACTATCTAATGGGCCCTACAAGTGTGATCTTTGTGACAAAacgtataaatacaaaaaagcaTGCGAGAGCCACCAGGCCAAATGCCCTGGTGAAAACCATGCCGCAACTTTGGTAGAGGTCAAGACGGAACCACCTGATAAACCTAGTAGGAGCTTCGTATATAGAGACACGGACGAAGAAGACAGCCCGGCTGAAGGGGAAGATTTGACTTGTGACATTTGCGAGAAGCAGTTCTCGTACAAGCGTCTATTGGAGCAACACAAGCGCATCAAGCACAACATGGGCTCGGGCCACAAGCGCGCCAAGATCACGCTCAAGGACTGCATGGTGCGCTGCCTCATATGCGACGTTGAGATGAAGGTGTCAACGATAAACGAGCACAACCAGAAGCACATAGAGGCGAACATAAAGCCCCGCAACCAGTACACCTGCGGGGAATGCGCGGACAAGTTCAAGAGCTGCAGTGCGCTCGCCACTCACATCAAACTGGTGCACCGGCTGAAGCAGCCGCCCAGCCAGGGGAATGAGCAGTTCGAAGGCGCAGACTTGGCGGATTTTTGTGAAGTCGTTGTGACGAAGACGGAACCCCTGGACGCGGTCCAGCGTCACAACGGCTGTGTTGAGGTTCCACTCGTCGACGGGCCACTAGTGGACATGGCCGGCTTCACCTGCCACATTTGCTCCAAGAAACTCAAGACCCTGATCTCCTTGAAGCGGCATGTCAACTGGCATGCAAATGTGGGGAATAATATCACCAAGACTATTGAATGCTTCGTCTGTAAAGAGACGTTCAAGTTCCAATGCCACTACAAGCTGCACATGCGCGCGCACTACACCGACCCCAACCTCGACCCCCAACACCTCACCTGCCAGATCTGCGGCCGCCGCAGCAAGCACCTGCGGGCAGCCCAGGCTCACATGAACTTCCACAAACAAACCAGGTTCAAGAACAAAGACTACCAATGCTCCATTTGTAAACGAGTCTTTCAGGATAGGAAGGTGTACTTAGCTCACATGGCGATACACTACAAGCGAGGAGAAGGACAGAACACGATTGTAGGAGATCGGCCCATGACATCTTCTATGAAGAACTTAGAAGGTGGGTATCAATGTCCACAGTGCGGGAAGGTTTGCGATTCCGAGAATTCCCTCAAATGCCATATCAGATGGCATTCGTCCAAATCAGCTCTCTTCGGGTCGCGGCACGAGTGTACCATCTGTGGTTTACAGTTCACTAACAAAAGACGACTGGAGATCCACACGAGAGACCACTATGAAGACGAAAACGGACCATACAAATGTTCCATCTGTGGTAAAGGTTACATCGACGAAGAATACTTCCGCAGACACGTCAAAGGACACAACTTTGACCATTTCAGTCATAAAAAGCGAATCGAGAAGCTTCGCAAAGATAAAGTTAAGTGTCCGATCTGCTCCCGGTACTACCCCAATCTGATCAAGCTCATTAGGCATCTAAAGCGAAGCCATCCTGAAAGTAAAATGATAAAGGAGGACCCCGACGCGCCTCCGCCGCAGTACCACAGCTGCAAACTTTGCACCAGAGTATTCCTCACGGAACTTAAACTCAAACGCCACCAAAAGGCGCATACGCGAAAACACGAATTCTTCAAGTGCAAATTCTGCGGCATCAAGAGTGTGTCTCTACGAAAACATAAGCTTCACGTCAAGCAAAAGCACATGACAACAAAATTCTTTGACAATCCGTTGAAGTGTCCCTACTGCACGGAGACTTTCATAATTGGGTACAAACTACAGCATCACGTGCGGGATGTACATGGGATCGACGAAAACTGGATCGCAGATCGCGAGGAAGAACCCATGGGGCCTTTGAAGGAGTTCCAATGCTCCGTGTGCCTCAAGATCCTCGCCTCCAAAGGAAACTACGAGCGCCATATCGACTACCACAACTCTTTACGCTGCAACTACTGCTTCGACTACTTCAGCTCGACTAAATTCCTCGAGGGCCATCTCGCGTTCAGCTGCGACAAGAAAAAACTTATCGGCGAAACCGAAACCTACCCGAAGAAAGTCAAATGCCACGTCTGTTACAAAGCTTTCGCTCTGCAAGTTAAAGTGGACTGTCACTTGCGAACGCAGCACGGCATCAAAGTAAACAGAGAGTCGGGTGAAGACAAAGGCGAGCATCTATGCGACTATTGCTTCAAAGTGTTCGAAAACGGACATGCCCTAGCGATGCATAAGATCTACCACCGCACCATAGGCTACTACGGATGCATTTACTGCGACCGCAAATTCAACACCTACCAAAGATTCTTCCGTCACAAGAAAGACCATTTGCTCCTTCTTAACCGGGAAGACCCGAACAAGTGCGAACATTGTGAGGAGACTTTCGTGTCGTTTAGAGACATGATCGATCATATGAAGGAGGCCCACGGCGACGACAAAGACTGGGTCGTACTGCCGAAAGAGGTCACCGAAGAATTCTGCACGATCTGCAACAAGGACTTCTACAACTTGCCAAGGCATATGTCCTATCACGAGGAGAACAGGTGCAAGAAATGCGGCGAATACTTCCTGTCCAGAACAGATTACGATAACCACCTCTGTGCCATAGAGAGCGACGAGGAAGTCAAGGAGGGAGACGAAAATGACATTCGGCCTAAATACGAAGAGTGCACGTTCTGCTTCAAGCCTATCACCAAAACGGTCACTAAGATACGACACGATCTCCTTCACAACACTTCCGGAGCGATCTCCTGCCGATTCTGCACAATGAAATTCAAAACTTTAGAGGCATTCAACATCCATTCGTTCTCGCACCGCAGCAGAAAGTATCACCAGAATCCGATCAAGTGCCGAATTTGTAAAGAGAAGTTCTTCAGATACGGACCTTTCGTCAAGCATATGAAAACGGTTCACAAGTCAAAGAAGAAAATGCATTACCGAGCCATAGTGAAAGCGGAACGTTGCGTCGTCTGCGGAGATAACTTCCCAAATCTGCACAACCACTACAGGTGCCATTTGAAGAACCAATGTTTGGAGTGCAAAAAGTATTTCAACTCTGTAAAACTGTTCAAAGACCATCGATGCGACAAAGAAGACGCGGATCCTTCTAAAGTGTTCACGAGCGACGAAGACCTGTACGCGCTCATCAAATCCTACGTTCCTAAGGACGAGAAAGACGACGAGAAGTTCTATGGCTACACTGATGATGAAGAGGAGGAAGAAGAAACACAAAGTGTTCCCGAAACAGCTAACGAGGATAGCCAGAGCTCCATGACAGATGTGATACAACAACCGTTCGTTATTTCTGACGTGCTGTCTCTCTACGAAAAAAGAGAAGAATTGTTAGCGACATATATGAAAGAGGACccgaaaaagaaagaattgaAAAAGTTTGTGGGGCCGAAAAGTAAAAGACCGAAAAAGGAAAGCCCTAAAAAGAATAGCCCTAAAAAGGATAGCCCTAAGAAGAACAGTCCTAAGAAAGACACGGAAAACAATGAGGGAGGCTTGAAAAATGGTAATGGTGACGctaacgatgatgatgatgacgatagcGACGTAGAAGTCGTCATAATGCTAGATGATGACTCCAATGGCGCTGAAAATACCAACAATATTGTCAGTATTGATcttgacgatgatgatgattga
Protein Sequence
MALKLGKCRLCLKLGDFYSIFTMDNSLQLSEMAMDCARIKIYEGDGLPDKICSECVQKLSSAYIFKQQCERSDTELRRNYVPPPGFSVTPPPPNRQSSDSAFSSANTDLSYHKPPSTEKVTPLNRARKRSRESMDESVSSRSHDYNPRPSNSKRVEELRTTNKRPRNHSPNASLDSDYEDTSYSHYSPGTDSDEPLISHKCKQCGKDFQSSMSLRGHMKIHKQKTSLAADDAVVKIPRKSMEDAKDSEDKLSCDKCHKTFKLKIMLKRHQETCVIASDYPQLNKELIISLEPVDGVVSPKKDRPVDPNKKSDRINCEMCSANFKTFDNMEKHMKYSHAAIPKQPRPVPPKVEMINFPCLYCCVPSDNYTAMAEHFNDCSKRDDTLPLKCPVCHKIMTKRHTFLSHVKQIHFFVVSKQESPTKTFDCRMCDKKLASQDLLISHLASHMSNVEEPAEVPDDDAGYTFRSVADDNQSMQSDYTASSSLSNGPYKCDLCDKTYKYKKACESHQAKCPGENHAATLVEVKTEPPDKPSRSFVYRDTDEEDSPAEGEDLTCDICEKQFSYKRLLEQHKRIKHNMGSGHKRAKITLKDCMVRCLICDVEMKVSTINEHNQKHIEANIKPRNQYTCGECADKFKSCSALATHIKLVHRLKQPPSQGNEQFEGADLADFCEVVVTKTEPLDAVQRHNGCVEVPLVDGPLVDMAGFTCHICSKKLKTLISLKRHVNWHANVGNNITKTIECFVCKETFKFQCHYKLHMRAHYTDPNLDPQHLTCQICGRRSKHLRAAQAHMNFHKQTRFKNKDYQCSICKRVFQDRKVYLAHMAIHYKRGEGQNTIVGDRPMTSSMKNLEGGYQCPQCGKVCDSENSLKCHIRWHSSKSALFGSRHECTICGLQFTNKRRLEIHTRDHYEDENGPYKCSICGKGYIDEEYFRRHVKGHNFDHFSHKKRIEKLRKDKVKCPICSRYYPNLIKLIRHLKRSHPESKMIKEDPDAPPPQYHSCKLCTRVFLTELKLKRHQKAHTRKHEFFKCKFCGIKSVSLRKHKLHVKQKHMTTKFFDNPLKCPYCTETFIIGYKLQHHVRDVHGIDENWIADREEEPMGPLKEFQCSVCLKILASKGNYERHIDYHNSLRCNYCFDYFSSTKFLEGHLAFSCDKKKLIGETETYPKKVKCHVCYKAFALQVKVDCHLRTQHGIKVNRESGEDKGEHLCDYCFKVFENGHALAMHKIYHRTIGYYGCIYCDRKFNTYQRFFRHKKDHLLLLNREDPNKCEHCEETFVSFRDMIDHMKEAHGDDKDWVVLPKEVTEEFCTICNKDFYNLPRHMSYHEENRCKKCGEYFLSRTDYDNHLCAIESDEEVKEGDENDIRPKYEECTFCFKPITKTVTKIRHDLLHNTSGAISCRFCTMKFKTLEAFNIHSFSHRSRKYHQNPIKCRICKEKFFRYGPFVKHMKTVHKSKKKMHYRAIVKAERCVVCGDNFPNLHNHYRCHLKNQCLECKKYFNSVKLFKDHRCDKEDADPSKVFTSDEDLYALIKSYVPKDEKDDEKFYGYTDDEEEEEETQSVPETANEDSQSSMTDVIQQPFVISDVLSLYEKREELLATYMKEDPKKKELKKFVGPKSKRPKKESPKKNSPKKDSPKKNSPKKDTENNEGGLKNGNGDANDDDDDDSDVEVVIMLDDDSNGAENTNNIVSIDLDDDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01337092;
90% Identity
-
80% Identity
-