Klyc003484.2
Basic Information
- Insect
- Keiferia lycopersicella
- Gene Symbol
- lrrfip2
- Assembly
- GCA_029255805.1
- Location
- JARACZ010000002.1:15396232-15419142[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.3e-69 9e-65 219.8 13.3 1 221 125 353 125 356 0.94 2 3 2.1e-16 3.5e-12 47.1 4.6 193 264 386 455 375 485 0.72 3 3 0.084 1.4e+03 -0.8 10.0 118 170 495 547 490 552 0.86
Sequence Information
- Coding Sequence
- ATGGGTAGGCCGGGGGACTTTGACACTCCCGACCAAAGTGACGAAGAAAGCGGGGAAGCCTTTACTGATGGAGATTTCGGTGATACTGACGATGATTTCTTAGACCCTCCTGTAAACCCGTCCAAAGATATTATTAATGAGACCACTAATTTAGATGTTAGAAAAGTAGATACGAATAGTGTTAGCGATAATGTTTTTGATGAAGATGACGAGCCGAAAGTAAACGGAGTGAAAAACGGACATGCAAGTGATATAAGTGATTCCGAAAATCGTAATATTAGTGATAGTGAAATCATGCCGGAAATCAGGAGAGATTCCCACGGCGACAACAACCCGTCAATTGTTGGGATTCTTGGAGGGCAACACAATCAAGCGGAACAGCGGCTGGCTGCCAGGCGAGCAGCACGAGCGGAGGCGCGGGAGATCCGCATGAGGGAGCTGGAGCGGCAGCAGAGGGAGCAGGAGGACCATGCGGACAAGGCGTACGACATGTATGCAGATCCCCTGGTGGGGCGACGGGGCGTCAGCAGGCTGGCCTCTCTCACCGGTACACCTGTCGGTCTCCATTCACCGAGGCGAAGCTCCGAAGACTCCGTCGACGATGGGTTTAGCATCAAAGACCTTAGGCATGAGCTAAAAGAGGTGGAAGAGAAGTTTCGCAAGGCGATGATACTGAACGCTCAGCTGGACAACGACAAGGCTGCGCTGGGGTACCAGCTGGAACTGCTGAAAGACAGGATAGAGGAGCTACATGAGGAATACGCACAACTACAGCGAGAACACAAAGAGAAATGTTCAGCGCACGAACGCTTAAAACGCGAGCACGCATCTCTCGAGCGCGAATTGACAGCCGCGCGCGACGCCGTGCGCGCACGAGACGCGGCCGTCTACCACGCGGGGTACGCGTTTGTCGAAGCGGGAAGCGTCCAGAATGGGGAAAACGGGGACGAGAATGGGGAGGGTGAAGAAGTGAGGGAGAGCTTCGGGTCGGTGCCCGCGTTGGCGCTAGTGAGCCATCAGTCAGAGCAGTTGCTGCAGGATGCTGGGGAAGGAACGTTGGCACGCGACGATCTACCACGCGGGGTACGCGTTTGTCGAAGCGGGAAGCGTCCAGAATGGGGAAAACGGGGGGAGAATGGGGAGGGTGAAGAAGTGAGGGAGAGCTTCGGGTCGGTGCCCGCGATGGCGCTGGTGAGCCATCAGTCGGAGCAGTTGTTGCAGGATGCTGGGGAAGGAACGTTGGATGTCCGATTGCAAAAGCTGGTAGCGTCCAAGCAGAGCCTGGAGTCAGAGGTGCGCAAGCTGAAGCTCCAGCTGAACGACGAGCGAGCCGCGCGGCAGAACGGGGTCGCCAACCACCACGACATCGACCGGGAGAATGAGATGGAAGCGCTGCGCAAGTCGTGCGCGGAGGCCAAGGGGCGCGCGGCGCGGGCGGAGGCCGAGGCCGCCATACAAGCCGCCGCCGTCGCCAGGCTGGAGGCGCAGGTGTCGCGGCTGAAGGCGCGGCAAGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGAGGAGGAAACTACAGAGAGAGGCGCGCGAAGCCCTCAACCGAGTGGAAGAGCTGGAGACGGAGAACAGCCACCTCACCAAGCGCCTCGACAAACTCAAGAACGCCAAGTCCGCCTTGCTGAAGGACCTGTGA
- Protein Sequence
- MGRPGDFDTPDQSDEESGEAFTDGDFGDTDDDFLDPPVNPSKDIINETTNLDVRKVDTNSVSDNVFDEDDEPKVNGVKNGHASDISDSENRNISDSEIMPEIRRDSHGDNNPSIVGILGGQHNQAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYADPLVGRRGVSRLASLTGTPVGLHSPRRSSEDSVDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHASLERELTAARDAVRARDAAVYHAGYAFVEAGSVQNGENGDENGEGEEVRESFGSVPALALVSHQSEQLLQDAGEGTLARDDLPRGVRVCRSGKRPEWGKRGENGEGEEVRESFGSVPAMALVSHQSEQLLQDAGEGTLDVRLQKLVASKQSLESEVRKLKLQLNDERAARQNGVANHHDIDRENEMEALRKSCAEAKGRAARAEAEAAIQAAAVARLEAQVSRLKARQDHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -