Klyc012460.2
Basic Information
- Insect
- Keiferia lycopersicella
- Gene Symbol
- -
- Assembly
- GCA_029255805.1
- Location
- JARACZ010000010.1:574174-583082[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.8e-11 3.1e-08 34.1 0.0 4 39 180 216 177 220 0.89 2 4 9.7e-13 6.3e-10 39.5 0.2 1 39 231 269 231 272 0.94 3 4 1.3e-13 8.3e-11 42.3 0.0 2 45 287 331 286 331 0.96 4 4 5.1e-18 3.3e-15 56.4 0.0 1 42 338 380 338 382 0.95
Sequence Information
- Coding Sequence
- ATGCCTGGACAAGGTCTGCCTCAAATAAAATGCGAGCCTACatcagaagaagaagatggcAATTCCCAATTTacaaattcatattttaatacacagataGGACCTTGTGAATTACGACCTGTAAAGTTGGAACCACAGTCCTACGAATCGCAGTTTAATGAAGATAATGTCCCGCCATCGCATCTCTTGCACCATTTGCAAGTTTCAGGATTGGAAGCGCTCGCGCCTGCAGGTCCTGCCGCCACTCCAGTGTCCGAATGTGTCAAACAGGAGCCGGTGCCTCCCGCAGCCACCTTCGAAACCTTGGAGTCAGCGCCACCACACGCTCACacgGGTTCAAATCTTATCGACCGTCATTTGGCGATGCTGACAGCAAATGAACTTCCAGAATCCTCAGACTTTCTGCCGCTATTACACGTCAAGGATGAACCGCTTTCTGAAGGAGAACAACATACCCATAGTGGTGACGATACCAGCGACTCCTCAACGCAACCAGAGCCAGCCGCTAGAGGGAGCCCCAAGAGCTGGACGCAGAAGGACATGGACAACGCATTGGAGGCATTACGGAGTCACAATATGAGCCTCACTAAGGCGTCAGCAACGTACGGCATCCCATCCACGACTCTCTGGCAACGAGCACATCGGCTCGGAATTGACACGCCGAAGAAGGAAGGGTCAGCCAAGTCCTGGTCGGAAGATGACCTGAGAAGAGCACTGCACGCGTTGCGGGCTGGTGCTATATCAGCGAATAAAGCCAGCAAGGCTTATGGTATACCCAGCAGTACCCTGTACAAGATAGCTCGTCGCGAAGGCATCCGCCTGGCCGCTCCCTTCAACGCAGCCCCGACCGCGTGGAGCCGCGCCGACCTCAACCGGGCGCTGGCGTCCATCCGCTGCGGACACAACTCCGTGCAGCGCGCCGCCACGCAGTTTGGGATACCCACTGGTACATTGTACGGGCGCTGCAAACGGGAAGGCATCGAGTTGTCGCGATCCAATCCCACGCCGTGGTCTGAGGACGCCATGGGCGAAGCTTTGGAGGCTGTTAGAGTGGGACAAATGTCAATTAACCAGGCCGCAATCCACTACAACCTACCTTATTCTTCTTTGTATGGCAGGTTCAAACGGTGCAAATACCAAATTCAGGGTATGCCAACTCAGCAAGAACTCCAACAGCCTTCAGAAATGGAGTCTGCACAAACTGATATGTATTACCAGCAGCCGTCCCATCCCGTCCTTCCAGAAGAGCAACACTACCACAACGTGTACACGGAGCACGATCCAACGATGCACGTCAATATGCCACAGCAACAGATGTACAGCCATAACCAGCAAGCTATGTACTACCAGTGCAATAGTATCGTCAGTTGA
- Protein Sequence
- MPGQGLPQIKCEPTSEEEDGNSQFTNSYFNTQIGPCELRPVKLEPQSYESQFNEDNVPPSHLLHHLQVSGLEALAPAGPAATPVSECVKQEPVPPAATFETLESAPPHAHTGSNLIDRHLAMLTANELPESSDFLPLLHVKDEPLSEGEQHTHSGDDTSDSSTQPEPAARGSPKSWTQKDMDNALEALRSHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSAKSWSEDDLRRALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWSRADLNRALASIRCGHNSVQRAATQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQIQGMPTQQELQQPSEMESAQTDMYYQQPSHPVLPEEQHYHNVYTEHDPTMHVNMPQQQMYSHNQQAMYYQCNSIVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00720139;
- 90% Identity
- -
- 80% Identity
- -