Klyc015550.1
Basic Information
- Insect
- Keiferia lycopersicella
- Gene Symbol
- Arid2
- Assembly
- GCA_029255805.1
- Location
- JARACZ010000013.1:4223229-4237230[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 3 3.4e+04 -3.9 0.1 23 35 90 102 88 104 0.81 2 7 6.9e-06 0.079 14.5 0.0 2 50 596 648 595 652 0.83 3 7 0.0049 56 5.3 0.0 23 50 654 682 649 685 0.83 4 7 0.0046 53 5.4 0.0 23 50 688 716 683 722 0.84 5 7 0.0047 53 5.4 0.0 23 50 722 750 716 753 0.83 6 7 0.0048 55 5.4 0.0 23 50 756 784 751 788 0.83 7 7 2e-06 0.023 16.2 0.0 23 78 790 848 785 849 0.80
Sequence Information
- Coding Sequence
- ATGGCAAAATCCCAAATAAATACGAAATCTAGTTCGTATCAAAGGGATAAGGAGGCTTTCCTGAAAGAACTGAAGCAGTTTAATGACTCAAAGGGCATTCCATACAAAGTGCCCAAAGTGAATGCCATTGAAATAGACTTGTATCACTTCTACACTTTGGTTCAACAAAAAGGAGGGTTGCACAAGGTGAACCAATCAGACACATGGGACAGTTTCCTTCGGCCATTGAGGTTGCCGCATCCTTGCATCAATGGATCCACGTTACTCAAGAGGATATATTCTATGTACCTTGAAAAGTACGAGCGCGCCAAAGGCCCTCCAGGAAGAGACGATGACAACGACGTCGACGAAGACCCACGACGCACGCGCGGGGGAGGCATGCCGCGTATCACATTCAGCGGCGGAACATACATATCAGCATCAGGTGAAACCCTTCGCACAGGCGGGCCGACCCGCGTGGCCGGCCCTTCAGAGCGGCTTGCCCTATCCCTTCTATCACCAATGCCCAATGAACAGGATTTTGCAGTGAACGTATGCACCGTTCTAGCAGCAGATCATTCTAATAGGCTGCCTCTGTCTACCACGCCGCATATATTGGACTTCTTATTGGCTCACGCTGGAGTTTATAATCATCTGAGTCTCCGCGATACGATCGGGCGTTCATACTATGAGGCGCGCGGTCGCTACCCTGACGACTTCTGGCGCAtgcgcgcgggcggcggcggcgctaaGGAGTTAGCTGACGAGACCAAATTCATGCAACCTGGGTTGGAACAACCTGAATTGTGCGTCCAGGCCTTAGCGGCGCATCATACGCTGACAGATTGTCTGGATATGACAGATGAGAATGAGGCTGTCATTGAGAAAGTCCAAGAGGAAGTTGCTATGACGTACGCAGAACCTCTCGAAGACTGGGTGACCGAGCCTTCAGAAGAAAGTCAGCTGTTCGCACCAGCGCTGCCAGGCGGCGCGGCCTGCGTTTATACTCAAAGAGTTCTacagGTTGCTTCAATCGTGCGTTCGCTGTCTTTCCACGATGAAAATTTACACCATCTCGCGAGAAACACCACACTTATCAGGTTCCTCTTGTTGTGTGCGAACTCGTGGGTTGGTACGCTGCGGCAATCTGGCTTGGATACGCTGGGAAATATCGCTACTGAACTCATTATAAAGGACCCAGCGACATGTCTGATATCCCGTCACGTGCTATCTACAATACAATCGTCGCTAGTGTCGCCGGACCGCGCGCGTGTGTTAGCCGCCTTAGAACTGCTCAACAAACTGTCACAAAACGAGGCCAACGAAGACGCCTTGTTGAAGAATTTAGAGGCCAAGGTGTACACCGATGTTTGCGCGCTATTAACTCTTCGCGATATAATGGTGTTGGTGTGTACGCTCGAGTGCGTCTACGCCCTGACGTCACTCGGAGACCGCGCGAGTGAGGCTGTGGCCAGAGTTCCTGGTTTAGTTCATACACTTGTGTCACTACTTACTGTTGAGGCTCAAAGCTACGGCCCGCGCGCTTGCATCCTCATGCGAGTGGTGGAGACAGTGAGCGGGCCGAGCGCGATCGCGGCCGCCGCGGCCGAGCGCGAGCAGCGCGAGCAGAGCGCGCAGCCACAGCAGCAGCCACAACCACAACAGCAACCTCAGCCCGTTGCCAAGCCTGCCCCCGAACCTGCTACCTCGACATCGGCTGCCGTAACGCCCGCCTCGACCGCCGTGTCACCCATGACAAGTATACAGCAGTCGCATTTGCAACAGAGAACTGTGCAGGAAAACGAGCACTTCGCGCAAGCGTGGCTACGATCAACTTACGAAGCCTTACCGGCCCACGACAACAGCGCGTGCGACTCCGCCGAGCTGTACCGGCAGTACCTCGCGTGCTGCACCAAGCTGGGCCGCAAGGGCGTCATCGCGCCTCTACACTTCCCCAGGCTGGTCAGCGCGTGCGACTCCGCCGAGCTGTACCGGCAGTACCTCGCGTGCTGCACCAAGCTGGGCCGCAAGGGCGTCATCGCGCCTCTACACTTCCCCAGGCTAGTCAGCGCGTGCGACTCCGCCGAGCTGTACCGGCAGTACCTCGCGTGCTGCACCAAGCTGGGCCGCAAGGGCGTCATCGCGCCTCTACACTTCCCCAGGCTGGTCAGCGCGTGCGACTCCGCCGAGCTGTACCGGCAGTACCTCGCGTGCTGCACCAAGCTGGGCCGCAAGGGCGTCATCGCGCCTCTACACTTCCCCAGGCTGGTCAGCGCGTGCGACTCCGCCGAGCTGTACCGGCAGTACCTCGCGTGCTGCACCAAGCTGGGCCGCAAGGGCGTCATCGCGCCTCTACACTTCCCCAGGCTAGTCAGCGCGTGCGACTCCGCCGAGCTGTACCGGCAGTACCTCGCGTGCTGCACCAAGCTGGGCCGCAAGGGCGTCATCGCGCCTCTACACTTTCCCAGGCTAGTCAGGACGGTATTCGGCGGCACAGTGGGTCCCAACACAGTGACCATATCCACTGGCGAGACCCAACAAGTGTACATCGGGATCCGCGCCAAGAACCAGCCGCGGCAAGCCCAGGCGCCCTCCTCGCCCATACTGAAGGCGCAGCTCACCAACAAGACTGCAGACACCAAAACTGTCGTCTCTCAGCCACAACCGATCCAACAACAAACGCACCCGCACCTATCGCAAGCATTAGAACCTGCCGCAACGCCCGGGCAGTCCAACACGTCACTGATCAAGCATCTACTCGCGCACAAAGTAAGCCCCGCCCCACCGCTGCAAGTAAGTGCCCACTAA
- Protein Sequence
- MAKSQINTKSSSYQRDKEAFLKELKQFNDSKGIPYKVPKVNAIEIDLYHFYTLVQQKGGLHKVNQSDTWDSFLRPLRLPHPCINGSTLLKRIYSMYLEKYERAKGPPGRDDDNDVDEDPRRTRGGGMPRITFSGGTYISASGETLRTGGPTRVAGPSERLALSLLSPMPNEQDFAVNVCTVLAADHSNRLPLSTTPHILDFLLAHAGVYNHLSLRDTIGRSYYEARGRYPDDFWRMRAGGGGAKELADETKFMQPGLEQPELCVQALAAHHTLTDCLDMTDENEAVIEKVQEEVAMTYAEPLEDWVTEPSEESQLFAPALPGGAACVYTQRVLQVASIVRSLSFHDENLHHLARNTTLIRFLLLCANSWVGTLRQSGLDTLGNIATELIIKDPATCLISRHVLSTIQSSLVSPDRARVLAALELLNKLSQNEANEDALLKNLEAKVYTDVCALLTLRDIMVLVCTLECVYALTSLGDRASEAVARVPGLVHTLVSLLTVEAQSYGPRACILMRVVETVSGPSAIAAAAAEREQREQSAQPQQQPQPQQQPQPVAKPAPEPATSTSAAVTPASTAVSPMTSIQQSHLQQRTVQENEHFAQAWLRSTYEALPAHDNSACDSAELYRQYLACCTKLGRKGVIAPLHFPRLVSACDSAELYRQYLACCTKLGRKGVIAPLHFPRLVSACDSAELYRQYLACCTKLGRKGVIAPLHFPRLVSACDSAELYRQYLACCTKLGRKGVIAPLHFPRLVSACDSAELYRQYLACCTKLGRKGVIAPLHFPRLVSACDSAELYRQYLACCTKLGRKGVIAPLHFPRLVRTVFGGTVGPNTVTISTGETQQVYIGIRAKNQPRQAQAPSSPILKAQLTNKTADTKTVVSQPQPIQQQTHPHLSQALEPAATPGQSNTSLIKHLLAHKVSPAPPLQVSAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00844099;
- 90% Identity
- iTF_00844099;
- 80% Identity
- iTF_00844099;