Isal010138.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ithomia salapia
Gene Symbol
-
Assembly
GCA_028829205.1
Location
JAPOND010000109.1:261883-268943[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 5.3e-05 0.0045 18.0 2.2 1 23 76 98 76 98 0.97
2 20 0.0059 0.51 11.6 1.9 1 20 104 123 104 126 0.93
3 20 1.4e-05 0.0012 19.8 5.4 1 23 145 167 145 167 0.98
4 20 0.00012 0.011 16.9 4.7 1 23 173 195 173 195 0.99
5 20 2.3e-05 0.002 19.2 5.3 1 23 201 223 201 223 0.97
6 20 7.5e-06 0.00064 20.7 7.3 1 23 229 251 229 251 0.97
7 20 4.7e-07 4e-05 24.5 2.9 1 23 257 279 257 279 0.97
8 20 6.7e-05 0.0057 17.7 6.7 1 23 285 307 285 307 0.97
9 20 2.9e-05 0.0025 18.8 5.4 1 23 313 335 313 335 0.98
10 20 3.2e-07 2.8e-05 25.0 1.9 1 23 341 363 341 363 0.98
11 20 3.3e-05 0.0028 18.7 7.9 1 23 369 391 369 391 0.98
12 20 1.6e-05 0.0014 19.6 6.6 1 23 397 419 397 419 0.97
13 20 5e-06 0.00043 21.3 4.3 1 23 425 447 425 447 0.98
14 20 1.3e-05 0.0011 20.0 6.4 1 23 453 475 453 475 0.97
15 20 3.3e-05 0.0029 18.7 6.1 1 23 481 503 481 503 0.97
16 20 1.6e-05 0.0014 19.7 6.1 1 23 509 531 509 531 0.98
17 20 3.7e-05 0.0032 18.5 7.8 1 23 537 559 537 559 0.97
18 20 2.9e-06 0.00025 22.0 4.1 1 23 565 587 565 587 0.96
19 20 0.00048 0.041 15.0 0.3 1 23 594 616 594 616 0.96
20 20 0.017 1.5 10.2 5.5 1 23 626 648 626 648 0.99

Sequence Information

Coding Sequence
ATGGGCGTGGAGGGCGCCGTGGTGAAGATCTCGACGGGGTCGGAGCACGACCTGCACGCAATGTACAAGGTCAACGTCGAGGACCTGTCGCAGCTACTGGCCTACCACGAGGTGTTCGGGAAGCTGAACACCGAGGGACAGCCGCAGGCCAAGGTGCTGAGCGAGGCGGAGGTGGAGGCGGGGTCGAGCGCGGCGCTGGCGGACGCCGAGTCGTCTCCCGGACATCACTCCTGCGACATCTGCGGCAAGATATTCCAGTTCAGATATCAACTCATCGTGCACAGACGTTATCACGGCGAAAGTAAACCGCACACGTGCCAAGTTTGCGGATCTTCCTTTGCGAATCCCGTCGAGCTGTCCAAACATGGAAAATGTCACCTTGCGGGAGACCCTGCGGAGCGACAAGCCAAGCGCCTGGCTCAGGACAAGCCCTACGCCTGCTCCACCTGCCACAAGACCTTCTCGCGCAAAGAACACCTCGACAACCACGTCAGGAGTCACACCGGGGAGACTCCCTACAGATGCCAGTTCTGCGCAAAAACGTTCACTCGCAAGGAGCACATGGTGAACCACGTGCGCAAGCACACGGGCGAGACGCCGCACCGCTGCGAGATCTGCAAGAAGAGCTTCACGCGCAAGGAGCACTTCATGAACCACGTCATGTGGCACACCGGTGAAACACCGCACCATTGTCAAATTTGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGAGGTCCCATACGAACGATACTCCCTTCAGATGCGAACTGTGCGGGAAATCATTCACCAGAAAGGAACACTTCACCAATCATATATTGTGGCACACCGGCGAGACTCCTCACCGCTGCGACTTCTGCTCCAAGACCTTCACCCGCAAAGAGCATCTCCTGAACCACGTGCGCCAACACACGGGCGAGTCTCCTCACCGCTGCAACTACTGCGCCAAGTCCTTCACCCGCCGGGAGCACCTCGTCAACCACGTGCGCCAACACACGGGGGAGACACCCTTCCAGTGCGGGTACTGCCCCAAGGCGTTCACGAGGAAGGATCACCTCGTGAACCACGTGCGTCAGCACACGGGAGAGTCGCCGCACAAGTGTTCCTTCTGCACCAAGTCCTTCACCCGCAAGGAACATCTCACCAACCACGTGCGCCAGCACACCGGCGAGTCGCCCCACCGCTGCGTGTACTGCTCCAAGTCCTTCACCAGGAAAGAACACCTCACCAACCATGTCAGGCAGCATACGGGCGAGACTCCTCACAAGTGCACGTACTGTCCGCGCGCGTTCGCGAGGAAGGAACATCTCAACCAGCACGTGAGGCAGCACGTGGGCGACTCGCCGCACACCTGCTCCTACTGCCAGAAGACCTTCTCCAGGAAAGAGCATCTCGTTACCCACGTCCGACAGCACACGGGTGAGACTCCATTCAAGTGCACGTACTGCGCCAAGTCGTTCAGTCGCAAGGAACATCTCACGAACCACGTGCATCTGCACACGGGCGAGACGCCACATAAGTGTGCTTTCTGCACGAAGACGTTCTCCAGAAAAGAGCACTTGACCAACCATGTGAGAATACACACAGGTGAATCTCCACATCGTTGTGAGTTTTGTCAAAAGACATTTACTCGCAAGGAGCATTTGACAAATCACCTCAAGCAACATACTGGAGACACGCCTCACGCCTGCAAAGTGTGCTCAAAGCCATTCACAAGAAAAGAACATCTTGTTACTCACATGAGGTCGCACAGTTGCGGCGAGCGACCTTTTAGTTGCGGCGAATGTGGTAAATCGTTCCCATTAAAGGGTAATTTATTATTCCACGAACGATCTCACAATAAGAGCAACGCCGCCAACAAGCCCTTCCGATGTGAAGTGTGCTCTAAGGAATTTATGTGTAAAgGTCACCTAGTAACCCATCGACGAACTCACAATGCTAATGAAGCCGCGACAACCGATCCCGCGCCCGAAGTAGAGGACTGCGGAGATTACGAAAAGTGCGACAAGGATGGCGAAAGACCCGAACGAAAACATGAAATTagaACATCAGTTGATAACAGAGCTACAGAAACTTCTGTGACAGTAAATCAGCAATCAAATACAACGGTTATGCAAATCACTAGccaaGAAGTCCGAACTGGAAATGCGACAGGCGCTGCATCGGTCGCCGGTACCTTCACGCATACGAGCACTCACCACTCCGGCGCGATAGCACAGCATCCCGTCACTGTCAACTACTAG
Protein Sequence
MGVEGAVVKISTGSEHDLHAMYKVNVEDLSQLLAYHEVFGKLNTEGQPQAKVLSEAEVEAGSSAALADAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPHTCQVCGSSFANPVELSKHGKCHLAGDPAERQAKRLAQDKPYACSTCHKTFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCVYCSKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFARKEHLNQHVRQHVGDSPHTCSYCQKTFSRKEHLVTHVRQHTGETPFKCTYCAKSFSRKEHLTNHVHLHTGETPHKCAFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLKQHTGDTPHACKVCSKPFTRKEHLVTHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKSNAANKPFRCEVCSKEFMCKGHLVTHRRTHNANEAATTDPAPEVEDCGDYEKCDKDGERPERKHEIRTSVDNRATETSVTVNQQSNTTVMQITSQEVRTGNATGAASVAGTFTHTSTHHSGAIAQHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00842858;
90% Identity
iTF_00842858;
80% Identity
iTF_00842858;