Isal000217.1
Basic Information
- Insect
- Ithomia salapia
- Gene Symbol
- -
- Assembly
- GCA_028829205.1
- Location
- JAPOND010000006.1:3987556-3989060[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-11 1.6e-08 34.8 0.0 4 35 85 117 82 122 0.92
Sequence Information
- Coding Sequence
- ATGTCGAGTTTGCAATGCCGTCATTACTCGCCACAAGATGTCGCCGCTCGTGCTAAAACGACACTGACACGTCGTACCAAAAATCACGATGTGGACATGTTAAAAAATGCTTTGCGGTTTTCTTCGTCAgcgaaaatattaaatGCAAAGCTGCTAGAGAATTCTCACGCTTGGCTCGGAGCCTCCACATCTTCGATTGCAGAATTCCATGGTCATACTCTCAAGCTGAAGGCGCCCACGTGGACTCAGAGTCAGCTGCAAGAAGCTATTCAAGCCGTCGTAACGCAGAAAATGAGGTTCACACAAGCGGCCACACACTACGGAATACCTAAGGGCACTTTATATGATAACATTTTGGGAAAATCAAAGCGTATGGCTGTGTTAGATGACGCCGGGCTCTCGGCCGGCGAGGAGAGAGCCGTGTTGGACTTCTGTTGCGAAACCAGTGTCTCTCCGTACAATCGACGAACTAAAAAATCATTAGCTGAAGTCCTTGCTTTTGTTGAGAAACTGAGACGAAGCAGAGACCCCGGCTTCGCTTTCATAGGTCTGACAGGGTTCCGCTGGTGGTGGGCGTTCTGTAAGAAACATTCCATTGTGTCCTTATATTACGAAGGGTCTATCAAACCTAGAAATTCTAAAGTAAAGACTGAAAATAATGACGATGACGAGACTTGA
- Protein Sequence
- MSSLQCRHYSPQDVAARAKTTLTRRTKNHDVDMLKNALRFSSSAKILNAKLLENSHAWLGASTSSIAEFHGHTLKLKAPTWTQSQLQEAIQAVVTQKMRFTQAATHYGIPKGTLYDNILGKSKRMAVLDDAGLSAGEERAVLDFCCETSVSPYNRRTKKSLAEVLAFVEKLRRSRDPGFAFIGLTGFRWWWAFCKKHSIVSLYYEGSIKPRNSKVKTENNDDDET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00782572;
- 90% Identity
- -
- 80% Identity
- -