Ipal000090.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- ECU06_1150_2
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010000002.1:395151-396922[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.0024 8.5 6.3 0.0 21 48 258 285 250 288 0.84 2 5 0.001 3.5 7.5 0.1 21 48 357 384 340 388 0.85 3 5 0.25 8.9e+02 -0.2 0.1 16 40 409 433 394 440 0.79 4 5 0.03 1.1e+02 2.7 0.2 18 43 467 492 457 497 0.89 5 5 5.2e-05 0.18 11.6 0.1 21 48 498 525 493 527 0.91
Sequence Information
- Coding Sequence
- atggaAACTGAAGAAATTACACCAAATACATCatctccaacaacaacaacaacaacaacaacaagtgatAACACGGTTATTATTAATCAGCTTATTTGTCGTCTGTGTGGTAATACAAATGAgaaatttattggaatatATAGTGAAGAAGGTATATCGAATGATTTAgcctttaaaattaatgaatatttaccgattaaaattaatgaaaatgatgatttaccaTTACAAtgttgtttgaattgcaccaGTACATTATTGGCATGgcatgaattatttataacaactCTAACAACAGCAAATCGATTTCAAgattatctaaataataaacaacaagttattgttgatgttgcttTTGTTGATGACTCGAAAAACTTCCATACAGAATCAACAACACACCGATTAATTGAGAATATATGTTACAGGGTGGGTCCAGAACAATTATCGACAAGTCTGAATGATTTTTGCCAAACGTCCAACAattcaacacaaaataaaaaacactcTCGTACTTATAAAActaagaaaaaagaaacaacaacaacaaatctaactgcattttataatcaatcaCATTTcgataattacaatataacTGATATTGaacatgatttaattaatgagGATTTATCAATTGAACAACCTGAAGTTAAAGTCGATATTGAAGAGACGAAATTATTAGCAAGTAATGATCCTTTATtgtcatcatcgtcatcgtcgtcAACATCatctgataatgatgatgattgtgaaTCAGATAAAGGCAAATCCTCACAAAAAGTGTTTGCTTGTCCATGTTGTTCAGTTGTGTTTGCATTAAAGAAAGATGTTAAGAAACATATAAAAGTCCAACATCCTGGTATGAAAGATCTTACACCAATAGCACAAGAAATTCCCCAAGTGAAATTTATAAGTACGAAAGAACGTcgtaaaaacaataaattagatCAAGATGCAGCCAATGCAGCTAAAGTCGTCGTTGATGgtcgtatttattataattgtaaagAGTGTGGTAAAAGTCTACATTCAccgtatacatatatatggcATATGCGGATACATACCGGTGAACGTCCATATGTATGTGATTTATGTGGTAAACAGTTTCGTGTCTCACAAGGTCTAGTGAGACATTTACGGGAGACACATCAAGGTATTAAGAAATTCCCATGTGATTTATGTGGACGGATGTTTGCAACACGTCGAAATGTCGAAGAACATCGACGGATACATACGAATGAACGTCCATATATATGTGATTTATGTGGTAAATCATTTAAACAGAAAGCTTCGTTGTTTGTACATAAACGTTCACATAAGAATTATTTCCCATTTAAATGTAGTTATTGTAATCAAGGTTTCCGAACCAAACCACCATTAATGGTACATATAACTCGACATACCGGCGAGAAACCGTATAAATGTGAAACGTGTGGACGTTGTTTTCGTATCAAATATGAATTGAAACGACACCGTCTCATACATTCAGATGAGAAACCGTTTAGTTGTACACTATGTGGATTGAATTTTCGACAGAAACGCTATTTGAGAAATCACATGAAATCTAATCATagtttaacaaatatttag
- Protein Sequence
- METEEITPNTSSPTTTTTTTTSDNTVIINQLICRLCGNTNEKFIGIYSEEGISNDLAFKINEYLPIKINENDDLPLQCCLNCTSTLLAWHELFITTLTTANRFQDYLNNKQQVIVDVAFVDDSKNFHTESTTHRLIENICYRVGPEQLSTSLNDFCQTSNNSTQNKKHSRTYKTKKKETTTTNLTAFYNQSHFDNYNITDIEHDLINEDLSIEQPEVKVDIEETKLLASNDPLLSSSSSSSTSSDNDDDCESDKGKSSQKVFACPCCSVVFALKKDVKKHIKVQHPGMKDLTPIAQEIPQVKFISTKERRKNNKLDQDAANAAKVVVDGRIYYNCKECGKSLHSPYTYIWHMRIHTGERPYVCDLCGKQFRVSQGLVRHLRETHQGIKKFPCDLCGRMFATRRNVEEHRRIHTNERPYICDLCGKSFKQKASLFVHKRSHKNYFPFKCSYCNQGFRTKPPLMVHITRHTGEKPYKCETCGRCFRIKYELKRHRLIHSDEKPFSCTLCGLNFRQKRYLRNHMKSNHSLTNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00842104;
- 90% Identity
- iTF_00842104;
- 80% Identity
- iTF_00842104;