Ipal007048.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- -
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010000684.1:37906-39138[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.5e-05 0.089 12.6 0.4 18 52 172 204 169 205 0.87 2 5 3.2e-05 0.11 12.3 0.0 20 47 200 227 197 232 0.92 3 5 0.032 1.1e+02 2.7 1.4 21 43 256 275 248 288 0.69 4 5 0.13 4.4e+02 0.8 0.2 21 41 281 301 269 309 0.77 5 5 8.8e-06 0.031 14.1 1.1 20 48 308 336 301 338 0.90
Sequence Information
- Coding Sequence
- atggaaaatgtatGTCGTATTTGTTTAAGGGTGCACACTGACTTGTTACCATTATATGGTAATATTGAgataattcataaaattgaaacaattgctTCATTTCAGgtgatagaaaatgaaaatttcccatCAAATATATGTCAAGAATGTTTCGATAATGTTAATAGATTCTATAATTTCCGTAAAGTGataatcaataatgataaagaattaCATGAAAGTCAAATAACATTAGAAAGTAATATAAGCAAAACCGAAATTACGAGCGTAAATCGAGATACATCATCATTTGATGATAGTACTattgatagtaataatgatgatgataataaggGGTCTCCATCTAGTGAAGAATTTCGACATAACATCATCGACCATGTaatgaataatgataataaaatagaagataATCATCTAATCCAATCAGAATCAAGAAATGCTGCATACAATCCATATAAATGTGACAAATGTAGTATAACGTTTACATCGCGTATGAGATTATATTATCATCGACGTAGTGTACATGATCCACGTGCTATATGTAATGTATGTGGTATGAGTATACGACAAGATAATTTAAAACGTCATGAACAACGGCATTCAGAGAAACCAGTAACATGTCAACAATGTggaaaagaatttaaaaatagtgaTTCATTACGTACTCATATGGAGGTACATCAGAATCTAACATTTACATGTGAAATATGTggtaaacaatttaaaaggaaattgtTGTATAATGAACATGTCAAACGACATACAgAACGCAAATCAGCTATATGCCCGATTTGTAATAAAGAAGTCGGCAAGTTAAAACGACATATGTATAGTCATACAGGTGAACGACCATATATTTGCCCGCATTGTAATAAAGGTTTAACAAGTACAAATgcattaaaaatacataaaagaCAACACACAAACGAAAAACCGTATAAATGCAATTTATGTCAAATGGCATTTCGACAGAGAGTCTTATTAAGAAGACATCTAAAATCGAAACATGATTGCATAAtttga
- Protein Sequence
- MENVCRICLRVHTDLLPLYGNIEIIHKIETIASFQVIENENFPSNICQECFDNVNRFYNFRKVIINNDKELHESQITLESNISKTEITSVNRDTSSFDDSTIDSNNDDDNKGSPSSEEFRHNIIDHVMNNDNKIEDNHLIQSESRNAAYNPYKCDKCSITFTSRMRLYYHRRSVHDPRAICNVCGMSIRQDNLKRHEQRHSEKPVTCQQCGKEFKNSDSLRTHMEVHQNLTFTCEICGKQFKRKLLYNEHVKRHTERKSAICPICNKEVGKLKRHMYSHTGERPYICPHCNKGLTSTNALKIHKRQHTNEKPYKCNLCQMAFRQRVLLRRHLKSKHDCII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00842177;
- 90% Identity
- iTF_00842177;
- 80% Identity
- iTF_00842177;