Basic Information

Insect: Iselma pallidipennis
Gene Symbol: -
Assembly: GCA_037464855.1
Location: JAZBHA010001906.1:1135-7321[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.3 1.1e+03 -0.5 0.2 26 48 86 108 82 113 0.80

2 12 0.064 2.3e+02 1.7 0.1 21 43 109 131 104 136 0.88

3 12 0.0028 9.9 6.0 0.4 21 45 137 161 131 167 0.87

4 12 0.034 1.2e+02 2.6 0.3 26 46 285 305 279 311 0.84

5 12 0.0022 7.8 6.4 0.1 21 45 308 332 304 336 0.89

6 12 0.076 2.7e+02 1.5 0.3 18 46 333 361 332 364 0.82

7 12 0.0064 23 4.9 0.0 21 45 475 499 469 503 0.86

8 12 0.0024 8.5 6.3 0.1 21 52 503 534 499 536 0.88

9 12 0.015 51 3.8 0.0 21 45 531 555 527 561 0.88

10 12 0.0014 5.1 7.0 0.0 21 45 587 611 577 614 0.89

11 12 0.00051 1.8 8.4 0.0 21 48 615 642 611 646 0.86

12 12 0.021 74 3.2 0.0 21 44 643 666 639 670 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.3	1.1e+03	-0.5	0.2	26	48	86	108	82	113	0.80
2	12	0.064	2.3e+02	1.7	0.1	21	43	109	131	104	136	0.88
3	12	0.0028	9.9	6.0	0.4	21	45	137	161	131	167	0.87
4	12	0.034	1.2e+02	2.6	0.3	26	46	285	305	279	311	0.84
5	12	0.0022	7.8	6.4	0.1	21	45	308	332	304	336	0.89
6	12	0.076	2.7e+02	1.5	0.3	18	46	333	361	332	364	0.82
7	12	0.0064	23	4.9	0.0	21	45	475	499	469	503	0.86
8	12	0.0024	8.5	6.3	0.1	21	52	503	534	499	536	0.88
9	12	0.015	51	3.8	0.0	21	45	531	555	527	561	0.88
10	12	0.0014	5.1	7.0	0.0	21	45	587	611	577	614	0.89
11	12	0.00051	1.8	8.4	0.0	21	48	615	642	611	646	0.86
12	12	0.021	74	3.2	0.0	21	44	643	666	639	670	0.88

Sequence Information

Coding Sequence: ATGTTTCATCAAGAGTTTTATggtaatgataaaaaaaagaatatgactgattgtgagaaacATCCCattaaaaatgaaCCAAATGcagatgaagaagaaaattcaaaaaatccTATTAAACCAAATGATGAGTATCCATTTGAATTTGTTACTACCGGTATTGATATTTCAGAAGagataaaaactgaaataaatgaaaatgatagtcttgataatgaaattgaaatcaGTACTGATAAAATCActaataaacataaatgtaAATTCTGCGAACGAGTTTTTCCACGTCGTGCAAATGTAATTCGACATTTACGAACACATACTaatgaaaaaccatataaatgtaCGGTTTGTGGTAGacgtttttcacaaaaatccAATCTCAACACACATTCAAAAACAcataataatgagaaacaaTCAACatgttatatttgtaataaaacttttcgACATTGTATTAGTCTAAAGACACATTTAAAAGCACATAAGGATAAAAAATCACGTTTAGAACGTGTGGACAATGAactattaattataaaagtcGATTCAATATTTCATCGAGAGTTCTATGGTAATGATACGGAGAATATTACTGAGCAACATCCCAtcaaaaatgaatcaaatgaagatgaagacgAGAATGCAAAAAATCAGATTAAACCAAATGAATTAGACACTGATGAATATCCATTTGAATTTGTTACAACCGGTATTGATATTTCAGAAGAGatacaaaatgaaataaatgaaaataatcgtCTTGATAATGAAACTGAGATCAgtattgatgaaattcaacaaatcaataatcaacaacaacaaattattaataaacaagtCAAGAAACATAAATGTACAATATGTGAACGAGTTTTTACCAGTCGTGCAAATGTAATTCGACATTTGagaacacatactggtgaaaaaccatataaatgtaCAATTTGTGGTAGAAGTTTTTCACAGAAATCCAATCTCAAAATGCATATACAACGACATAATACTGAGAAACAATTAACATGTCATATTTGTAATAGAAGTTTTCTACATTGTATCGGTTTAAAGACACATTTAAAAGTACACAAAAATGAAACATCACGTTCAGAACATGATGATAGTGCAACTAACAaaaagaTTAAACTAGAACCAAATGAGAATCAATCTGTTGAagaacaatttgaaattaaagcTGAAGAATTTATAGTAAATGATGAAGAAATTATAGAAGATATAAAAAACGAAACGAATGAGAATAATCGTCTTGATGATGAGACTGCAATTAAAATCGATAGAAATCAAGAATCACTAATAGATAAACAACAAGAcactaataatatttcaaaaaagtaTATATGCAAGATTTGTGGAAAATATTTTACCCGCCAAGGAAATTTAAATGTGCATGAACGATTGCATACTGGTGAGAAACCATTTACATGTCACATATGCAATAAGAGTTTCCCACAGAAATCCTATTTGAAAGTACACTTTAAAGTACATAATGGTGAGCGACCATTTCCCTGTACAATTTGTGAGAAAAGTTTCCAAGAGAAGAAAGTCTTAGAAAGACATTTAAGAATACATAGTGGTGAGAAACCGTTTatctgtaatatttgtaataaaagttttacacaaaaacCACATTtagataaacatttaattgtacATAGTGGtgagaaattgtttaaatgtcACATCTGTGATAAGAATTATGCTGAGAAGGAATacttaaaaaaacatatacgAGTACATAATGGTGAGCGACCATttacatgtaatatttgtggtaaaagttttacacaaaaacCAAATTTCAATACACATTTGAAGGCACATAGTGGTGAGAAACCATTTTCGTGTAGTATTTGTCAGAAGAGTTTCTCACAAAAAGTTAATCTAACAGCACATTTGCGCGTACATAGTGGTGAAAAGCCTTTCAAGTGTAATCtttgtgataagaaattttcacaaaatagaGATTTGAAGATCCACTCTAAAGTTCataataatatggaaaatttgtaa
Protein Sequence: MFHQEFYGNDKKKNMTDCEKHPIKNEPNADEEENSKNPIKPNDEYPFEFVTTGIDISEEIKTEINENDSLDNEIEISTDKITNKHKCKFCERVFPRRANVIRHLRTHTNEKPYKCTVCGRRFSQKSNLNTHSKTHNNEKQSTCYICNKTFRHCISLKTHLKAHKDKKSRLERVDNELLIIKVDSIFHREFYGNDTENITEQHPIKNESNEDEDENAKNQIKPNELDTDEYPFEFVTTGIDISEEIQNEINENNRLDNETEISIDEIQQINNQQQQIINKQVKKHKCTICERVFTSRANVIRHLRTHTGEKPYKCTICGRSFSQKSNLKMHIQRHNTEKQLTCHICNRSFLHCIGLKTHLKVHKNETSRSEHDDSATNKKIKLEPNENQSVEEQFEIKAEEFIVNDEEIIEDIKNETNENNRLDDETAIKIDRNQESLIDKQQDTNNISKKYICKICGKYFTRQGNLNVHERLHTGEKPFTCHICNKSFPQKSYLKVHFKVHNGERPFPCTICEKSFQEKKVLERHLRIHSGEKPFICNICNKSFTQKPHLDKHLIVHSGEKLFKCHICDKNYAEKEYLKKHIRVHNGERPFTCNICGKSFTQKPNFNTHLKAHSGEKPFSCSICQKSFSQKVNLTAHLRVHSGEKPFKCNLCDKKFSQNRDLKIHSKVHNNMENL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00842020;
90% Identity: iTF_00842020;
80% Identity: iTF_00842020;