Iinq013272.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ischnus inquisitorius
Gene Symbol
L
Assembly
GCA_963924025.1
Location
OZ001251.1:7952161-7963478[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 1e-05 0.00085 19.9 1.5 1 23 96 118 96 118 0.98
2 21 0.58 49 4.9 3.9 1 23 124 146 124 146 0.97
3 21 1.1e-06 9.1e-05 22.9 1.8 1 23 152 174 152 174 0.99
4 21 0.017 1.4 9.8 0.1 1 23 180 202 180 202 0.98
5 21 8.7 7.3e+02 1.2 0.6 2 23 277 300 276 300 0.80
6 21 0.00017 0.014 16.1 0.2 1 23 365 388 365 388 0.97
7 21 0.32 27 5.7 0.0 2 23 399 421 398 421 0.91
8 21 1.8 1.5e+02 3.4 0.0 2 23 495 516 494 516 0.94
9 21 0.032 2.6 8.9 0.0 3 23 532 553 531 553 0.95
10 21 0.0015 0.13 13.0 1.4 1 23 562 585 562 585 0.92
11 21 3.2 2.6e+02 2.6 0.2 1 23 590 613 590 613 0.91
12 21 0.65 54 4.8 2.0 2 23 686 707 685 707 0.96
13 21 0.0019 0.16 12.8 0.1 1 23 712 735 712 735 0.95
14 21 3.2 2.7e+02 2.6 0.1 1 23 805 829 805 829 0.82
15 21 6.1e-05 0.0051 17.4 1.0 2 23 845 867 844 867 0.96
16 21 1.4 1.2e+02 3.7 0.7 1 12 876 887 876 899 0.76
17 21 0.0037 0.31 11.9 0.2 2 23 1109 1131 1109 1131 0.96
18 21 0.043 3.6 8.5 0.7 1 23 1141 1164 1141 1164 0.96
19 21 0.36 30 5.6 1.0 2 23 1177 1198 1176 1198 0.95
20 21 0.0052 0.44 11.4 0.2 2 23 1207 1229 1206 1229 0.94
21 21 0.39 33 5.5 2.2 1 23 1236 1259 1236 1259 0.95

Sequence Information

Coding Sequence
atgcttTTCAAAGGCAATAGTTCGCGTTTGGAACTGCTGATTGGGAAGATTCAGGCGCACAAGGGATCGCCCTCACCGCCGCGCGACGAAAAGTGCGTTACGATTGTCAAAGaCGTGCTGGGCACCGGTAGTTCGTCCCACAGCGAGGATGGGGTACAAAATTCGCGACGAGGCGGCGAAACCCCGTCGTCATGCGCTACACCGACCTCCGCGAGTTTTCCATCGGAGCCGGAAGTCGACGCCGAAAATGGTATAAACGCGGACGGTAACAACACCGCAGCACCTTATCCGTGCCAATTTTGCGACAGAACATTTCCCAGGCTGAGCTACTTGAAGAAGCACGAACAGagTCACGGCGATCAAATGCCCTATCGGTGCAGCTGGTGCGCAAGATTGTTCAAGCACAAGCGTAGCCGAGATCGTCACGTGAAGCTTCATACCGGCGATCGAAGGTATCGTTGCTCTCTTTGCGAGGCCGCGTTCTCCAGGAGCGATCATCTGAAGATTCACATGAAAACTCACGACAAAGACAAGCCTTATCAGTGCTCACCGTGTGCGCGTGGCTACAACACGGCGGCAGCTCTGACGTCGCACATACAGTCGCACAAGAAGAATCGGTCGGCTCGTCAAAGCTCAACATCGGAACGGGACTACGGCCGTCGAAGCGTCTCATCCCACAGCACGTCTTCGCCGCCAATTCCGAATTCTCCAGGTCCGAGCTTCAACCTTTCTCCGAATCTGAGGAATTCATTCACATCCCAACAATCCTCGTACACGAACAGTAACGGCGCTCCGACAACGCCAATCCTGAATTCCCCGTTGAAACTCACGTGCATGTACTGCACCAGAGACTCGTTCACGAGTATGCAGCAATTGCAGATGCACGTTAACGAGATGCATCAGTCGATCCTGAACGGCGAAGGTTTGACCATGCCGTCGCCGGGTCACAGTCAGCAAGAGGCCAACAATTTGCGTTCAAGAGAGTCCGACAAGTTCGACAGAAGCGCGCGTAAGGACAACGAGACGACTTATCGTCGGGAAGAACGCGAAAAGTCAACGGAGCGCGATAAGGGTGATGCGATTGAAAATTCGTTCCCCTGCGGTCAATGTACGATGAGGTTTTCCAATCTCAGCAGTCTGCGGGATCACGTGGAAACGATTCATCGCAACGACTGTTTCGGCTCGACTCTGATGATGTGTCCACTCTGCGGCGTTCCCTGCGCCTCCGCCGCCTCCTATGCCGAGCACTATGCTCTACAACATTGCGAGAGTCGATCGCGAGTTTCGTCGTCCAAGGATCCATTTCGCAGAGACTGGGGGGAGGTCAAATCGAACGGCACCTGTCCCGAGCTAATCCGCGCGGGTTCCAAGACTCAGAGCGCGATCGCGAGGTCGTCCGAGATTGGTCCGGCGGAACCGGCGGATTTGACGAAGAAGCATCAAGCGAGATCCGGCGAGGCCGGTTCCTCGACTGGAACGTGGGTGTGCGGACAGTGCGGCGCCGCGTCGGAGGATTTCGAATCGTTCAGAGAACATTTCGCGAGGCACCTTCGACCCGATCAACAGAGCAACGAGGTCGTACCGAGAAATCCATGCCCGAAGTGCGACGCCGTGTTTCCCGAACGCGAGGACATGCTGGAGCATCTGACGAAGATGCATTATCTGGGACAGATGACCAAGGAGTACGCCTGCGGTGCTTGCAAAAAATGCTATCCACATCCGGATCTATTGCAGCGACATTTGCTGGACACGCATGCTCATCATCTCTACAAATGCGCTCTCTGTCGCGACACGTTTGACTCGAGGGTGGCGATACAAGTTCACTTTGCCGTTAAGCACAGCCGGGAATGTAGGATCTATCGTTGCCCGACTTGCAGCGCGTCGAACAACGAAAATTCACCGGGCAACACGCCGCGCGAGGGAATATGCTACTTTCACAGCGAAGCCGAGATGAACAATCACGTTAGAACCGTGCACGCACCGCCTAACGGCGTCAATGAGAGCCCACTGCCGAGAAGTCGCGCCTCGACTCCGGGCATCACTGCGAATAATTCGCGATGCGTTTTTTGCGGAATATGTTGCAATAACGATTTAGAACTACAACTGCATCTTGCCAGTCACTCCACTAGCTTGTATCGATGCCCGATTTGTCGCGAAGGATTTTCCGTGGAATTTTTGCTCGATCGGCATATATCGCAAGCTCATCGCGTCaacaacgagagaaacgacggGAGGGAAAATGGAAGGACCCACAGAGTTTCGCGATCGCACGAGGAAACGATTAAGTCCCAGAAGCGCGGACGTTCGCCAGCCTCGAGCAACAACAATTCCCTGAATCAGCGGGACAATAATACAAAGCGTCCAAATTACGGGCCGACGAGCAACGGTCTGAACCCGATGACCTCTGTCCAACACCCTTGCGAGCTCTGCGAGCGAGGCGAATTCGCGACCGAAGCTGAACTTCAAGCTCACAAAAAATTGGTTCACACGCCGGTGAAGCTTCAATCGAAATCTCTGTCGTCGCTGAGCATGACTTGCGCTTATTGCGGCGAGGTATGTCGTTCGCGAAGCGAGCTCGAGTCACACACGAGAATTCAGCATGCGTCGAACGAGCCCGGCGGACGTCACAAGTGCAACATATGCGACGAGGTCTGTCCATCGGGCGGAATACTCGCCGAGCACAAGCTTCAGAAACACTGCAAGATTCAGCTGAGCGATTGTTGCATCGTTTGTCGCGGTTCGCTGGGAAGCGAGGCACAGTTTATGGAACATCTTCAAAAGCACAGTCTGGAAGTTGCCGATCCGCAGCAGAGATTGGACAACGCAGTCGGTCATTTGCCGGTCGCTTGCGTAGTTTGCAGACAAACGCTCATCAGCGATTTGGAGTGTCGTCTGCACGCGAGACATCATCTTAGGGGAACCTCGGGCTTTCAGAGTTCGAGCTCCAGTCCAAGTCCGAATCAACCGAAAGcccaacagcaacaacaaaagCAACAGCAGCAAACGGCTCTAAGCTGTTGTCTGTGCTTGCGAGAGTTCGGGGCCGATGACTTCGTCAGTTTACCACCGAATCCAGCCGTGACCGGTGGTCAGTCGTTGAGAGTTTGCAAATCGTGTTACGTCAGACATACCCAAGGATTACCGATACTGAGCTCGCCGTACGAGCACGCTAGGCCGtcgaagagcgaaaaaaccGCTTGGGCAACGGCTCCCAAGGAGCAAAACAATTCTGAAGGATCCAGCGATCAGTGGGACAACGAGAGATTCTACAAAGCTGAGAAGAATAATCGAAACGCAACGTTCCCGAAGGATTCCGACGCCAACAGATGCGAGGAGTGCGGAATTAAATTCGAAAGCTCCGAGGAAGCTGAGAATCATAGAATGAAGGAACACGGAACGAATTGTCGAAATTCGAACACCTATACGTGCATACAGTGCCAGATGTCGTTTTCGAGCGAGGAGAAAATTCAGCAACACGTCAGAAAGGATCATCTGGAATCGCCGAACAAAGCGTCGATAGATGCGCTGCGTTGTCATCTTTGCCATTTCGATGCTAACAGTCCGCTTCAACTTCAGGCACATCTGATCGAACACACTTTTGCCGGTTGCGCCGGTCTTACTTGTTACATCTGCCAGGCCCTTTTTACAACTTCTATCGCACTGCAGAATCACATGCTTCAGCAGCACGGTCTCGGCGCGCGTCCCTACGACTGCAGTTATTGCagtttgaaattctttttccgCATCGAATTGGATCATCACGTTGTAACGACGCATAGACGCAAGGAGAGTTCGTCTCCGTCCGTGGACGTGGGACAAAACAAGCTAACCGAGGATTGGCCAGTGCCCGGTAAAGGTCGCGAGGACGACGAATGTTTGGACAACGTGACAGTGAAGAAGGAAGTTGCCAACAGTCCCGAAGACGAGGATGTCAATGTGGACGACAACGTCGATCAGAGCGACGGTCACGAGACCAGTCGCGAAGAACGAAATCTCGTGACCGCGAAGGAAGAGCCTTTCGCGACACCGAgtattgacgaaaaaatcgaatccgATTCGAACGAACGtcaggaacaaaaaaattacgaatga
Protein Sequence
MLFKGNSSRLELLIGKIQAHKGSPSPPRDEKCVTIVKDVLGTGSSSHSEDGVQNSRRGGETPSSCATPTSASFPSEPEVDAENGINADGNNTAAPYPCQFCDRTFPRLSYLKKHEQSHGDQMPYRCSWCARLFKHKRSRDRHVKLHTGDRRYRCSLCEAAFSRSDHLKIHMKTHDKDKPYQCSPCARGYNTAAALTSHIQSHKKNRSARQSSTSERDYGRRSVSSHSTSSPPIPNSPGPSFNLSPNLRNSFTSQQSSYTNSNGAPTTPILNSPLKLTCMYCTRDSFTSMQQLQMHVNEMHQSILNGEGLTMPSPGHSQQEANNLRSRESDKFDRSARKDNETTYRREEREKSTERDKGDAIENSFPCGQCTMRFSNLSSLRDHVETIHRNDCFGSTLMMCPLCGVPCASAASYAEHYALQHCESRSRVSSSKDPFRRDWGEVKSNGTCPELIRAGSKTQSAIARSSEIGPAEPADLTKKHQARSGEAGSSTGTWVCGQCGAASEDFESFREHFARHLRPDQQSNEVVPRNPCPKCDAVFPEREDMLEHLTKMHYLGQMTKEYACGACKKCYPHPDLLQRHLLDTHAHHLYKCALCRDTFDSRVAIQVHFAVKHSRECRIYRCPTCSASNNENSPGNTPREGICYFHSEAEMNNHVRTVHAPPNGVNESPLPRSRASTPGITANNSRCVFCGICCNNDLELQLHLASHSTSLYRCPICREGFSVEFLLDRHISQAHRVNNERNDGRENGRTHRVSRSHEETIKSQKRGRSPASSNNNSLNQRDNNTKRPNYGPTSNGLNPMTSVQHPCELCERGEFATEAELQAHKKLVHTPVKLQSKSLSSLSMTCAYCGEVCRSRSELESHTRIQHASNEPGGRHKCNICDEVCPSGGILAEHKLQKHCKIQLSDCCIVCRGSLGSEAQFMEHLQKHSLEVADPQQRLDNAVGHLPVACVVCRQTLISDLECRLHARHHLRGTSGFQSSSSSPSPNQPKAQQQQQKQQQQTALSCCLCLREFGADDFVSLPPNPAVTGGQSLRVCKSCYVRHTQGLPILSSPYEHARPSKSEKTAWATAPKEQNNSEGSSDQWDNERFYKAEKNNRNATFPKDSDANRCEECGIKFESSEEAENHRMKEHGTNCRNSNTYTCIQCQMSFSSEEKIQQHVRKDHLESPNKASIDALRCHLCHFDANSPLQLQAHLIEHTFAGCAGLTCYICQALFTTSIALQNHMLQQHGLGARPYDCSYCSLKFFFRIELDHHVVTTHRRKESSSPSVDVGQNKLTEDWPVPGKGREDDECLDNVTVKKEVANSPEDEDVNVDDNVDQSDGHETSREERNLVTAKEEPFATPSIDEKIESDSNERQEQKNYE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00721499;
90% Identity
-
80% Identity
-