Iinq013056.1
Basic Information
- Insect
- Ischnus inquisitorius
- Gene Symbol
- topi
- Assembly
- GCA_963924025.1
- Location
- OZ001251.1:5653530-5655940[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.9 2.4e+02 2.7 1.4 1 23 256 278 256 278 0.86 2 16 0.077 6.4 7.7 1.7 2 23 285 307 284 307 0.95 3 16 1 86 4.1 0.1 2 21 314 333 313 334 0.91 4 16 1.1e-05 0.00094 19.8 0.8 1 23 341 363 341 363 0.97 5 16 2e-06 0.00017 22.1 1.6 1 23 369 391 369 391 0.95 6 16 0.046 3.9 8.4 0.2 2 23 403 424 402 424 0.90 7 16 1.2 1e+02 3.9 1.0 1 23 438 460 438 460 0.96 8 16 9.1 7.6e+02 1.2 0.6 1 12 466 477 466 488 0.76 9 16 0.0028 0.23 12.2 0.8 1 23 498 522 498 522 0.90 10 16 0.053 4.4 8.2 0.0 1 21 537 557 537 558 0.95 11 16 0.038 3.1 8.7 0.0 1 23 563 585 563 585 0.98 12 16 2.5e-06 0.0002 21.8 3.1 1 23 591 613 591 613 0.98 13 16 0.00016 0.013 16.2 0.4 1 23 619 642 619 642 0.97 14 16 0.06 5 8.0 0.7 1 23 648 670 648 670 0.89 15 16 3.2e-07 2.7e-05 24.6 0.8 1 23 676 698 676 698 0.99 16 16 7.5e-06 0.00063 20.3 4.9 1 23 704 727 704 727 0.96
Sequence Information
- Coding Sequence
- ATGAATGAATTCAAAGAGGAGTCGATCGGCGAGTTGAGCGAAATGGACGAGGAcatcgacgagctcgacgaggaGAGTATCGGCTGGTCGCAGGACGAGCCAGTGTCGTCGTGCGAAGCTCCGGAACCGGAAGCGAAACCAGGCTCGAGCGGCACTTCCGCCTCGCTCTGCCGTTTATGTGCCGCTCGGGTCGTTGATCCCGTGTACATTTATTCCGAATTCGGAGAATCAATGAAGCTCGCTCACAAAATAAATAGCTGTTTAAGCGTCAAGATCAGAAAAACGGATCATCTACCGAAGCAGCTCTGCTCGACTTGCGTCGACAAGATAAACTGGTGCGAGGCTTTCGACGCTCAGTGCATCGAAGCCGAGGAAGCGCTGGAAGCGATGCTTCGCGACAGACGAGAATCCTTCGATTTGACGGAGGTCGTTACCCGTGAGATCCTCTCCGACGAGAAATCTTGTCCCTTGTGCATCGAGGGCCACATGCAAACGAGTTGCCTGAACGAGACGTCGAGCGGTGGATCGCCGATCGATGGGATTCTGTACGAGAGCGACGTAGTCATCGACAGCAGCGACGAGGAAAAGGCGCTGGACGATTTGGACTTTCCGAAGGAGAATCGCGATCCGAACTCGATAAGGCTCGAGTGTCTCGGCAGCAGCGAGGAATATCTGAAATGCGGGGCGTGCATGAATCTCTATCACACGCGCGAAAGCCTCGACGATCACAAGTGCAAGCCGAACATTCAGAGCACTTCGAGACCGTACGAGTGCAAATCGTGCGACGCGAACTTCGCCTTCGAGGAACGTCTGAATTTTCATACGAAATTTCACAACGGCGCGAAGGAGCTCCACTGCGACATCTGCGATATAAATTTCGCCAAGGAATTGAAGCTGTTCTATCACTACAAGCGTTATCACTGCGAGAACAACGCGGTGTCCTGTCTGCAGTGCGGCAAACTGCTGGAGGGCCAGCGCGAGCTCAGAGTTCACGTGTGCGTGGACGGCAAAACGCGACCGCACGTGTGCGAGGTCTGCAACAAAGGATTCTCCGACGGTTACACGCTGAAGCGTCACATCGTCACGCACTTGCCCGAGAAGCCTTACAAATGCTCCGAGTGCTCGAAGAGTTTCACGCAAAAGTCGCGTCTCAACAAACACGTCGCCGGTCACGGTCTCGTCATCGAAAAAACTCAGAACGCATGGAAATGCCTCGAGTGCGGCGAGACATTCGACAGTCGCGACCGAGCCGACGAGCACGCGAAGAAACACGCGAAAAACTCGATCGCCCAAATTACcgtatcgaaaatttatcacTGCGAATTCTGCAACGCTTATTACGTCGACGCGGAGATTCTTCGCGAGCATCGGACTCGTCACGTCGCGGAGAAGCCCTATTCGTGCAACGATTGCGCGACTATCTGCAAATCCTTCGCCGACGCCGTTCCCCACTGGAAGGAACACGCGACGGGGTTTCGCGTCGCGACGCTCTATCTCTGCGACGTTTGCGGCAAGGAGACAAAAGAATTGTCGCTGCTCTACAAGCACAAGCGGAAACGCGAGCATCTGACAGCGCGAAGATcggagaacgacgagaacgaggcgaAATACGTTTGCGAACTCTGCGCTCGGGGTTTCGGGAGCATCGAGGATTTGAGGACGCACGCACGGGAACAGTGCACGAAATTTCCGTGCGACGTTTGCGGGAGTCTGCTGCCGAGCGCGAACTCGCTGCTGGCTCACAAGAGGCGACACAACGGTCTGCGACCGTACGTTTGCAATATATGCGGCAAAAGTTACACGCAATCGAGCCACATGTGGACCCACAAGAGATTCCACATGGGCGTTAAACCGTACGCCTGCGAATACTGCGATCAGAGATTCACGATAAAGCCCGATCTGGCCGATCACACGAGGAAGAAACACACGCGGGAGCGGCCCTTCAAGTGCGACGTTTGCAACAAGGCCTTCCTCACCGGCTCGGTGTTCTATCAGCACAGACTCATACATCGGGGCGACCGGAGATACAAATGCACCTACTGCGAGAAAGCCTTCACGAGAACCGAGGCTCTCAATAATCATATTAAGATTCACACGGGCGAGAAACCGCACGCGTGCGACGTTTGCGGAAGATGCTTCAGGCAAAAGGGCGACATGCGCAAGCACCGACGAACTCAGCATTCCGTTGCCAGGgacgaattttcgtga
- Protein Sequence
- MNEFKEESIGELSEMDEDIDELDEESIGWSQDEPVSSCEAPEPEAKPGSSGTSASLCRLCAARVVDPVYIYSEFGESMKLAHKINSCLSVKIRKTDHLPKQLCSTCVDKINWCEAFDAQCIEAEEALEAMLRDRRESFDLTEVVTREILSDEKSCPLCIEGHMQTSCLNETSSGGSPIDGILYESDVVIDSSDEEKALDDLDFPKENRDPNSIRLECLGSSEEYLKCGACMNLYHTRESLDDHKCKPNIQSTSRPYECKSCDANFAFEERLNFHTKFHNGAKELHCDICDINFAKELKLFYHYKRYHCENNAVSCLQCGKLLEGQRELRVHVCVDGKTRPHVCEVCNKGFSDGYTLKRHIVTHLPEKPYKCSECSKSFTQKSRLNKHVAGHGLVIEKTQNAWKCLECGETFDSRDRADEHAKKHAKNSIAQITVSKIYHCEFCNAYYVDAEILREHRTRHVAEKPYSCNDCATICKSFADAVPHWKEHATGFRVATLYLCDVCGKETKELSLLYKHKRKREHLTARRSENDENEAKYVCELCARGFGSIEDLRTHAREQCTKFPCDVCGSLLPSANSLLAHKRRHNGLRPYVCNICGKSYTQSSHMWTHKRFHMGVKPYACEYCDQRFTIKPDLADHTRKKHTRERPFKCDVCNKAFLTGSVFYQHRLIHRGDRRYKCTYCEKAFTRTEALNNHIKIHTGEKPHACDVCGRCFRQKGDMRKHRRTQHSVARDEFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00397536; iTF_00398303;
- 90% Identity
- -
- 80% Identity
- -