Iinq000211.1
Basic Information
- Insect
- Ischnus inquisitorius
- Gene Symbol
- -
- Assembly
- GCA_963924025.1
- Location
- OZ001243.1:899339-902092[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.035 2.9 8.8 0.3 3 21 8 27 6 28 0.85 2 14 0.33 27 5.7 0.0 2 20 34 52 33 54 0.92 3 14 0.58 48 4.9 0.2 1 12 211 222 211 231 0.89 4 14 0.016 1.4 9.8 2.4 1 23 351 373 351 373 0.97 5 14 0.00077 0.064 14.0 0.1 2 23 377 398 377 398 0.97 6 14 0.00067 0.056 14.2 1.9 1 23 410 432 410 432 0.98 7 14 0.04 3.3 8.6 0.2 1 23 451 472 451 472 0.92 8 14 0.0003 0.025 15.3 0.1 2 23 478 499 477 499 0.95 9 14 5.2e-05 0.0044 17.7 4.8 1 23 546 568 546 568 0.99 10 14 2.3e-06 0.00019 22.0 3.7 1 23 574 596 574 596 0.96 11 14 0.00026 0.022 15.5 4.1 1 23 602 624 602 624 0.97 12 14 1.6e-06 0.00013 22.4 0.8 1 23 630 652 630 652 0.98 13 14 0.0001 0.0083 16.8 0.2 1 23 656 678 656 678 0.99 14 14 0.00021 0.018 15.7 0.1 1 23 686 708 686 708 0.98
Sequence Information
- Coding Sequence
- ATGGGTTCTCTGAGTCTCGTCTGTCCCATGTGTTGCGGCGAATCGTTCGACAATTCGCAATCGTTGAAGTATCACCTGTTGAGCATGACGGACAATCTTTACTGTCCCAATTGCGATCAACGCTCGGACTCCGTAGCGGCATTGATACAACACTTGGACAAATGCGGCGAGTGCCCAGAATTCGATAgacgcgagagggagagaatgGAAATTTCTAACGGCGAAGAATTCACGGAACCGGCGATGGACGAATCGCATCCCAGCTTTCTCGCCAGCGTCGACAACGATGGTCTATCGATCGTCGGACATCCTCGCGCTATCGAGATCGACGAAAGTGGCTGCGTCGGGGCCGTCCGGAGAAAGGAGACGGAGGAAGAGAAGCGCGGAGAGGAAGCCGCCGTAGAGAGTACCCAAAGTATAAGAGATGATAAACTAGTCGAAATTTCGgagattgtaaaaaaaaatgaaattttcgtcaaagaCGAAGATAGTAGATCGACGACGATAGAGGAGGACAATGTATCGAGTCTGGTGGAAACGGAGCATCCGGAGGATGGCGAAACCATTCGGGAATTCGACGAGGACGGAATCCTTCGAGTGAAGGAAGAAATATGCGAGGACGAGTCCCTGTACAGTTGTAGCAGTTGCGGAATGAGCTTCAACAGCGTGTTGGAGCACATTAAAGAGTACCACGACGGTCAGGAGGTCGTGCTCGAAATGGCCGAGCAGCAAATGGACGATTCGCCCGAGGAAGGCAACGGTCCCGCGAGTGAGAACGGCCCGATCGAGCGGTCTTCGACGCTCCCGGGGAGTGTGCCGCGTCAGCGTCAAACAATGAACACTTTGAGAACCGAAGAGTGCGTCGACAGCGAGGGACGTCTCTACACGCGAAAGGTCGTGCAGATCGAAAGATTTTGGGATCGCGGCACTTCCGTTTCGCAACAGCAGCCCCCCAAGAGCGGGCCGAtgatcgagaaatttttctcgaacgtcCAGGGCGTGAAGATGCGCGCCAAAAGTCcgccgagcgcgaacgcgccCCAACGAATGTACCGATGCAACAAATGCCTCGAGCAATTCTCCAAACTCGGAGATTTTCGCGTACACGCTTGCCTTCACGGCAACAATCGTTGCGACCTCTGCGAGCAGGCTTTCGCGAGCGCCAAAGCGTTGCAGGTACACTCGCGGATTCATCGGCTCGAGCTCGACGGCGGCACCGGAAAGAATTTCGTTTGTCCGACGTGCGCGACCGAATTCTCGTCGCACAAGAGCCTGCGATTGCATTCGCGGATGCACGCCCCGGTGAGAGCGCGACACGTCGACGCGCCCGAAGGAACGGtcaacgaaaatttcaccTGCCTCGAATGCGGAAAAACTCTGTCGGAGTCGTACAGAATAGCGCACATGGCGCTTCACAAAGGAGATTCCGTAACGTGCTCGATTTGCAACCGCAAATTCGATTCATCGGACAGTTTGGCGATGCACGCGGCAGTGCACATCGAAGGAGGCCAAtcgcagcagcaacagcaacagcagcaacaacaacaagaacAAGTAACGTTGATACAGACACAAGAGGAATCTACCGGAGAAGCCGAACAGAGGGTTACGGATCCTCTCGAGAATCAAAAGCCGTATCAGTGTCAACACTGTGGAAGAAGATTCACGAGACCGCACGAGAAGGTGAAACACGAGAGGATACACACGGGTGAAAAGCCTCACGCCTGCGAGGTATGCGGCAAAACGTTTCGCGTTTCTTACTGTCTCACCCTTCACATGAGAACGCACACGGGTGTGCGTCCCTACGCTTGTCAGCATTGCGGCAAGCGCTTCAAAGCTTCGTCGGTTTACAATCATCATTTGTTGACCCACGGCGAGGAGCGCGCCTACACGTGTCCCTACTGTCCGAAGACTTTCAAGACTCGTGTCCAATTGGCCGGCCACAAGAACAGTCATACGAAACCGTTTCGTTGCACCGAGTGCTCGCGGCCTTTCGCCTCCCTGTACGCGGCGCGCGCTCACATACAGACGCACAAAAAGGATAACAACCTGAAGTTCAGCTGTTACATATGCGGCGCCTCGTACGGTCGTGCCTTCGCGCTCAAGGATCATCTCAAGGTCCACACCGAGCACGACGTTCTCGCGCCGCCGGAGGCCGCGCGCGAGGAAGAGATCACCGAGGATTATCTCATAACCGAGGAAACCAACGATTTCGAGGATATCGAGGAGAAGGAACTCGTCGCGGTGGCGGCCGCCGCCGGCGTTTCCACCGACTCTCACTCCGTCATCGTTCACGATCAAACCGAATGA
- Protein Sequence
- MGSLSLVCPMCCGESFDNSQSLKYHLLSMTDNLYCPNCDQRSDSVAALIQHLDKCGECPEFDRRERERMEISNGEEFTEPAMDESHPSFLASVDNDGLSIVGHPRAIEIDESGCVGAVRRKETEEEKRGEEAAVESTQSIRDDKLVEISEIVKKNEIFVKDEDSRSTTIEEDNVSSLVETEHPEDGETIREFDEDGILRVKEEICEDESLYSCSSCGMSFNSVLEHIKEYHDGQEVVLEMAEQQMDDSPEEGNGPASENGPIERSSTLPGSVPRQRQTMNTLRTEECVDSEGRLYTRKVVQIERFWDRGTSVSQQQPPKSGPMIEKFFSNVQGVKMRAKSPPSANAPQRMYRCNKCLEQFSKLGDFRVHACLHGNNRCDLCEQAFASAKALQVHSRIHRLELDGGTGKNFVCPTCATEFSSHKSLRLHSRMHAPVRARHVDAPEGTVNENFTCLECGKTLSESYRIAHMALHKGDSVTCSICNRKFDSSDSLAMHAAVHIEGGQSQQQQQQQQQQQEQVTLIQTQEESTGEAEQRVTDPLENQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKVHTEHDVLAPPEAAREEEITEDYLITEETNDFEDIEEKELVAVAAAAGVSTDSHSVIVHDQTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00398293;
- 90% Identity
- -
- 80% Identity
- -