Cvid001657.1
Basic Information
- Insect
- Cryptus viduatorius
- Gene Symbol
- -
- Assembly
- GCA_964006125.1
- Location
- OZ023220.1:23102409-23105130[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.043 3.8 8.5 0.2 3 21 8 27 6 28 0.85 2 14 0.59 53 4.9 0.0 2 20 34 52 33 54 0.92 3 14 0.81 72 4.5 0.3 1 11 211 221 211 231 0.82 4 14 0.03 2.7 9.0 1.6 1 23 364 386 364 386 0.97 5 14 0.00078 0.07 14.0 0.1 2 23 390 411 390 411 0.97 6 14 0.00068 0.061 14.1 1.9 1 23 423 445 423 445 0.98 7 14 0.041 3.6 8.6 0.2 1 23 464 485 464 485 0.92 8 14 0.0003 0.027 15.3 0.1 2 23 491 512 490 512 0.95 9 14 5.3e-05 0.0048 17.6 4.8 1 23 559 581 559 581 0.99 10 14 2.3e-06 0.00021 21.9 3.7 1 23 587 609 587 609 0.96 11 14 0.00027 0.024 15.4 4.1 1 23 615 637 615 637 0.97 12 14 1.6e-06 0.00014 22.4 0.8 1 23 643 665 643 665 0.98 13 14 0.0001 0.0091 16.7 0.2 1 23 669 691 669 691 0.99 14 14 0.00022 0.019 15.7 0.1 1 23 699 721 699 721 0.98
Sequence Information
- Coding Sequence
- ATGGGTTCTCTGAGTCTCGTTTGTCCCATGTGTTGCGGCGAATCGTTTGACGATTCACAATCGTTGAAATATCACCTGTTGAGTATGACGGACAATCTTTACTGTCCCAATTGTTCTCGACGTTCCGACTCGGTTGCCGCTTTGATACAACATTTGGACAGCTGCGGCGAGCATCCAGAGTCAGATCGACGAGCGCAACTTTCTAACGGAGGAGAACCCACGGACACTCCGACGGACGAGTCGAGCGGCGACTTTCTAGGAACCATCTGCGAGGATGGTATATCCATCGTTGGAAATCCTTGTACCGTCGAGATGGATGAATGcggCGCCGTTAGAGCGCTCCGCCGAACAGAGAGCGAAGAGGACAAACGCGAGAGGGAAGCCATCGTGGACGATGCGCAAAGTATAGAAGACGATAAACAGGTGGAAAGTttggaaattgttaaaaaaagtgAGTTTTTCATCAAAGACGAAGATAGCGGATGGACGACGATCGACGACGAAAGGCGGGACGAAAACGCGTCGAATCTCATCGAAACGGAGCATCTGGACGACGGCGAAACTATTCGGGAATCGGAGGAGGACGGACCGCTCGGCGTGAAACGAGAAATATGCGAGGACGAGTCTCTGTACAGTTGCAGCAGTTGCGGTATGAGCTTTGACAGCGTGTTGGAACACATCAAAGAGTATCACGACGGTCAAGAGGTTGTTCTCGAAATGGCCGAGCGGCAAATGGACGATCCCGCGATGGAGGAAAGTAACGCGGAGAGCGGTCCCGCGGAGAGTGGCCTCGAGCTCGAGCCCCGATTGGTACCCTCGGGGAGTACGTCGCGTCAGCGTCAAACGATGAATACGTTGAGAAGCGAAGAGTGCGTCGACAGTGAGGGTCGTCTTTACACCCGAAAAGTCGTGCAAATCGAAAGATTCTGGGATCGTAGCGCGGCCGCGTCGCAATTGCAGTCGCAGCAACCTTCCAAGAGCGGACCGatgatcgagaaatttttctcgaacgtcgAGGGCGTAAAGATGCGCGCGAAAAGTCCGATGGACACGAGCGCCGGCTCATCTTCGAACGCGCCCCAACGAATGTACCGATGCAACAAGTGCCTCGAACAATTCGCCAAACTGGGAGAATTTCGCGTACACGCTTGCCTTCACGGCAATAATCGTTGCGATCTCTGTGAACAGGCTTTCGCGAGCGCGAAAGCTTTGCAGGTGCATTCGCGAATTCATCGGCTCGAGATTGACGGTGCGAATGGAAAGAATTTCGTTTGTCCGACGTGCGCGACCGAATTTTCCTCGCACAAGAGTCTGAGATTGCATTCGCGGATGCATGCCCCGGTCAGAGCGAGACACGTCGATGCGCCCGAAGGAATCGTAGACCAAAATTTCACCTGTCTCGAATGCGGAAAAACATTGTCGGAATCGTACAGAATAGCGCATATGGCGCTTCACAAAGGAGATTCCGTAACGTGTTCGATTTGCAATCGTAAATTCGATTCTTCGGACAGTCTGGCGATGCACGCCGCTGTGCACATTGAAGGAGGCCAattgcagcagcagcagcagcagcaacagcaccaACGAGAACAAGCAACGTTGGAACAGAGACAAGAGGAATCTGCCGGCGAGGCTGGACAAAGCGTTACGGATCCTCTCGAGTCTCAAAAGCCGTATCAGTGCCAGCACTGCGGAAGAAGATTCACAAGGCCTCACGAGAAGGTGAAACACGAGAGGATACACACCGGTGAAAAGCCTCACGCTTGCGAGGTATGCGGCAAAACCTTTCGCGTCTCGTACTGTCTAACGCTTCACATGAGAACTCACACGGGTGTACGTCCCTACGCTTGTCAACATTGCGGCAAGCGTTTCAAAGCATCATCGGTCTACAATCATCATTTATTGACGCACGGCGAGGAACGCGCCTATACGTGCCCCTACTGTCCGAAAACTTTCAAGACTCGCGTCCAATTGGCCGGACACAAGAACAGTCATACGAAACCATTTCGATGCACCGAATGCTCACGACCGTTCGCCTCTCTGTACGCGGCACGCGCCCACATTCAGACGCACAAAAAGGACAACAACTTGAAGTTCAGCTGTTACATATGCGGCGCTTCGTATGGTCGTGCCTTTGCCCTCAAAGATCATCTCAAGGTACATGCCGAGCAGGACGTGCTCGCGCCGCCGGAGGCCGCACGCGAGGAAGAGATCACCGAGGATTATCTCATAACCGAGGAAACTAATGATTTCGAGGATATTGAGGATATCGAACGCGAGGAGAAGGAACTCGTCGCGGTGGCGGCGGCTGTCGGAGTTTCCTCGGATTCGCGCTCCGTCATCCTTCACGACCAATCCGAATGA
- Protein Sequence
- MGSLSLVCPMCCGESFDDSQSLKYHLLSMTDNLYCPNCSRRSDSVAALIQHLDSCGEHPESDRRAQLSNGGEPTDTPTDESSGDFLGTICEDGISIVGNPCTVEMDECGAVRALRRTESEEDKREREAIVDDAQSIEDDKQVESLEIVKKSEFFIKDEDSGWTTIDDERRDENASNLIETEHLDDGETIRESEEDGPLGVKREICEDESLYSCSSCGMSFDSVLEHIKEYHDGQEVVLEMAERQMDDPAMEESNAESGPAESGLELEPRLVPSGSTSRQRQTMNTLRSEECVDSEGRLYTRKVVQIERFWDRSAAASQLQSQQPSKSGPMIEKFFSNVEGVKMRAKSPMDTSAGSSSNAPQRMYRCNKCLEQFAKLGEFRVHACLHGNNRCDLCEQAFASAKALQVHSRIHRLEIDGANGKNFVCPTCATEFSSHKSLRLHSRMHAPVRARHVDAPEGIVDQNFTCLECGKTLSESYRIAHMALHKGDSVTCSICNRKFDSSDSLAMHAAVHIEGGQLQQQQQQQQHQREQATLEQRQEESAGEAGQSVTDPLESQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKVHAEQDVLAPPEAAREEEITEDYLITEETNDFEDIEDIEREEKELVAVAAAVGVSSDSRSVILHDQSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00397518; iTF_00841303;
- 90% Identity
- iTF_00397518;
- 80% Identity
- -