Basic Information

Gene Symbol
JARID2
Assembly
GCA_963924025.1
Location
OZ001247.1:4626071-4632567[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 3.3 6.5e+03 -2.1 0.2 44 82 143 181 138 183 0.58
2 2 1e-22 2e-19 70.0 0.0 6 89 1331 1412 1327 1412 0.94

Sequence Information

Coding Sequence
ATGGTATTGGGTCGAAATgacaagagaaaaaggaaagaggGCGATCTCGTGGATCTCATGGATCCCCTGTCAGAGTCACCCAAAAGaacaaAGGTACACGCGCAACGAAAATTTGCTCAAGGAGCGGCGACCGTTTTCAGTCCTGCGCCGACGTTGGTCaaggaaaaggagaaaacCAAGCCAGCCGTCATAACAGAACTAATAACGCACAAGCGACCCAATACCGAAGATTTCCTGACGTTTCTCTGCTTCAGAGGAACGTCTATACTGCCGCCGAgtttgaatttcttcaatgTCGGCAGCAAGAAGGAAAAATCCGAGACGAAAGTTTGCCCAGCCGCGAAGAGcaaatcctcgtcgtcgaatgCGCCTCCCGCGGCGACGATCGCCAAGCAGGAAACGACTTCGAACGCTCAGAGCAAGCCCGGCGGCAAAAGCGCCGTCGCCGTGAAGAAGAAAGTAACGCCGGCCGTCTCGCAGAAGCCCCTGAACAAATACAAAACGGCGAGTTCGACGGTTCAAGCGTTGAAGAAGAAGTACCAGGAGCAGCGACTCGCCAAGCAGAGAATCCGAAACAAATTCAAAGCTTCGTGCGTGATGAGAACGCGCTCGGCGACCGAGCGCGTGGTCTTGAAGACCGTGACGAAACTTGCGCCGCGaaagtttctcgcgcgaaacgaaacgaagaagcgTCACGGCTTGCGGAGCGGCGGATTTCCCGAAAAAGCGAAGAAGACGAGCGCGCCGCCGACGAAGGGACGGCAAATCGCGTCGAAACCAAAGAAGAGGCTCGTCGTGAAGGAACAAACGAGCGAATCGTCGGAATCGGAGAGCGCCACGTCCGAGGACGACGACGCGGCGCCGTCGAAGAACGCGCCGCCGTTGAAGCGCTCGACGAAAGCGATACAGAAGAAAATTTGCACGCGCAGCAAGTCCGAGATGAGACGGATAACGCGCTCGCAGAGGGACAGCGCGCCGACCGCCTCGGCGATGTCGCGGAGACCGTCGAGAAAGACTAAAGAGGCCGCGGCCGTTTACATGGAGATATTGGGACGAAAATTGGTCAGTCCCGATATCGAGAACGACGACAATCTCTCGGTCGACAGTTTTCCCGAATTGCCGAACGCGCGTCGCACCGCCCAGGCGGAGAACGAGATAAGAGCGAAATCGAAACAGACCGCGAAGAGTCGCGATGTCAAAGGGAAAGAGTCGAAGAGCGCGGAAAACTCGAGCTCGTGCAAAGCCAAGCCAAAAGTCGAGAAGCCGATACTGAAGAGCAGCAAGAGAACGCTCCGAGTGCGAAGATACTGCGAATTGGACAGCGAGGACGAGTCCGAGACTTCGATAGAGCCGGACAAAACGCGACACGTGACGAGACGTAGCGCTACCAAAGTCGAGAAGCCGGCGACGCGAAGCCTgcgctcgtcgtcgcgcaATCAATCGTCGAAGAGCGAATTGCCGTCGCCGACGAGGGTTCTgaaggagaaggagaagaTCGCAACGACAAAGCGCGCCCGACCGCCGCAGAAGAGGACCGAGAGCGAAGAGTCCGAGGAAGAAGAGTCGTTGGGAACTCTGCTGAGCAAgctgaagaagaagaaggaagagaaaacgGAGGTTCGCAAGGCGGCGGATCAGAATGAATCGCCGCCGATCGAGAATCCGGTCGAGCCGAGTCCTTTGCGTCCCGCGAGATCGAACAATCCCACACCGTCGCAGGtgtccgacgacgaggaatctTTTCGCGGTTTCACGAAGAAAGCGATATCGAAGGTACTGAGCTCGTGCAACACGCACGTCAACGCCAATCTTCTCGCGTCGGAGGAGGCTTACGGAAAATTGGATGTGCTCAAAACACAAGATACGCCCGAAGTCGATGCCTCCGTACAGCGCGACGCGAAACACGCGACGGACACCAAAGTCGAGCCGTTGACGAGCGTCGCACCGATATTCACGCTGGTGAAGCCCGTTCAAGAACAGTCGACGGTCGCCACTTGCACGCCCGAGATCGGAActccgagtctcgacgaggcCACGAAACTAGACACGAGATGCAATCACGCGGAGAACAATTCGGCCACGAAATTGATCGAAATGCCGCTAACGGTAATGCACGGACGAACGGGACGCGTGTACATGACGACGGAGCAGATCGAACAATGGTTGAAGGACAGCTCAGACGCGAAAGCCAAGCAGAAAAAGCTACTCGCCTCACCGAAGAAATATCCATCCGGAATTCCGGACAATGTTCCAAAAACCGACATGAATCACTTGTCGATACCGACGAGAATTCAGCACCTCGTGCGCCCGGTCAACGTGACGATAGCTAAGTTAGCGGAAAAGGCAAACGCTCGCGATCGAATGGGCTTTCAGAGCAGAATAGCATCGACCTGCATAACCGGAGCGAGGATACCCCTCGCCAAGCCTCTCAACATACCGATACCCAACAGAAACAAGATAAACGCCGACATAAAGGAGATAATAAAGGGCAGAACGGCCAAAGTCACGAAGGAGGCATCGACGGGCGAGGAGAGCGAGGATTTCGGTAAATCCGATCAAAACTCCGTGGACGGTTCGCCCGACAAGAAATCGACGCCGGAGAAGAAGGGCATATTCCAACAGCGCAAAACTTTCTTGTCGAAAGTCAAGGAGCGCAAAACGGCGACACCGAGCGCGAACGCATTCTCACCGGAGAACGAGAGCAGCGTTTACGCGTTCGAGAGCGACACCGAAGTGCCGATAAACACGCCGTTTCGTCGGAAGCTCAAGGAGCTCGGGCAGAAGGGCGGTGGTGGCGGCGGCACGTCGGAGCCCGATACCTCGAGAACGGGcaacgacgattcgtcgaagtTCAGCGACGTCGGTACGGGCAGCGAGACCGATGGAAAAACCTCGTCGCCCGGCAAATTCGCGATACCGAAGAGTTTCGGAAATTTGTCGAACGTTCAGGTATTGCCGCTCGGCAAAATGCCCGCCGAATGGGGCGGCGCGAATTGCAGCGCTTCGATAGCCGTTCAAGTGAACTTCGACGAACAGTCGCAGGAGCTTccgcaacagcagcaacgCGAGGACAATTCGTTGACGCAGGAGAGCGAAGATCCGCAACAGAAATGTACGGAAATATCGACGCAGACGGAGAACAcgaacgacaacgaggacgacaACGACGGCGGTCACGTTTTTTACATTCCACTGCAGACCGTGACGAGAAACGGCCCGAATCTCGTTCAGGGCCAACAATTGATACAGGGAGTAGCCGTTAAACTCGGCACCGAAGGCCCCAACGGCCCGAATCAACGAGTCCTGCTGAGAGCTCAACTCGTTACTAAACCACCCGCGGCCGTTGCTCGGTGCCCTCCGGTCGGCACTGTTCagccgacgacgagaactcCGCCGAGTTCGTCGAGCAGCACCTCGGTACTCGATCATCCTTACGCTACAGTTAATCCTCCCGTAGCATCGACCTCGGAATTGCCCGCTCCGATCGTTCCTTCCGCACAGAGTACTCCGGATTTCCAACCGCCGCAGCCGCAACCGCCCAGTCGCGCCTCCTCGAATCACAGCACGAGACAGAGTTCTTCTGGCTCGAACGTACCGGAAAAAGCAACGAAATCGCcgaaagcgacgagagaacgaaaagcTTCCGTGGACTCGACGAAAACGGGCAAAAGAGCTTCCGCGAAATCACGGGCAAAAGCGGCCGAGGTTTTGTCACCGAGCAACACAACAGCGTTTCCGTGCTCGACGAACAGCAACGCCGAGGCTCGTCTCGTCGAGGCGCCGACTTTCCATCCGACCGAGAAAGATTTTCAAGATCCCCTGGAGTACATCGACAAGATCAGACCGATTGCCGAGAAATTCGGCATATGCCGCGTCGTGCCACCGGCGAATTTCAAACCCGAGTGCAAAGTATCGGACGACATGCGTTTCACCGCTTACAACCAGTACGTTCATCGAATGCTGCATCGTTGGGGCCCGAACGTTAAGGAGATGATGGCGATCAAGAAATATCTCGCGACGCAGAGCATCACTTTGACTCATCCTCCATGgATCGGCGGTATGGAAGTTGATCTGCCGCACTTGTACCAAACGGTCCAGAGTCTCGGCGGATTGAAGGAAGTgatcgagaagaagaaatggCAAAAAGTCGCCGACGGCATGAAAATACCGAAATCGGCCCAAGATCGCGtcacgaaactcgacgatatttattgcaaatatttgtTGCCCTACGACACTCTTTCGCCGGAGGAACGAGGCAAGTTGTTCGACGACGTCGAAGCCGAATGGAAAATAAGAGAGACGAAGACTCTGCAGAGGCTCGACGACCAGTCGAACGACgccgacgaggaagacgacgacgatagtTCGGACGAGATCGAAGAGTGCATCGTCAAAGGCCGCAATATGCCGTTGAACGCCTTCTATCGTATCGCTCGAAACACTCAACGCATGTGGTTCGGCGAGAATCAACGCTCGGGAAGCGAGGCCGAGGGTGCATCAGCCGGCGAAGTCGAGACCGCGTTCTGGAAGCACGTCGCCGAACGCAAGCGTCACGTTTGCGTTCACGCCGCGAGTATCGACTCGAGTGGACGAGGCTTCGGCTTTTCCGTCGCGAAGAACAGCCCCTTCGCCAGACATCCGTGGAATCTTAAAGTTTTGACGAATAACGCTGGCTCGGTGCTTCGAGCTCTTGGACCTCTGATGGGCGTAACTGTGCCGACCCTCCACGTCGGTATGCTCTTCAGCGCGTGTTGCTGGTATCGAGACCCTCACGGGCTTCCCTGGATCGAGTACCTTCACACGGGAGCGAAGAAGATCTGGTACGGCATTCCCGACGAGCACAACAACAACTTCCGCGAAGCCCTCTCGAAGATGGTTCCGCGCTATTGCAAGAAGAAGACTATATGGCTGCCATCCGACACTGCCATGGTACCGCCGGAAATGTTGGTCAACAACGGCGTTCCGCTGTGCCAAACGGTTCAAGAACCCGGCCAATTCATCGTTGTCTTTCCCAAAGCATTCACCTCGAGCATATGTACCGGTTACGTGGTCTCCGAAAGCGTGTACTTTGCTCAACCTGCCTGGCTGGAAAATGCCGAACAAGTGTTCAAGGATCTGCACGACAGCTGCGAGCCgtcgatattctcgttcgagcgaCTACTCTTCAGTATCATTAACGACACACGATCGCACATAGACGTACTGAAACAGATCATGCCAGCGGTCTTGAAGATTCGCGAACGCGAGTTGGAGTATCGCAAGCAATTGGAATGCATAGGATTagcgaataaagaaaaattaccacTGCCCGACACCGGTAAGGGAAAGAAAGGGAAGAAAGTCAAGGAGGAGGACGGCGATTTCGAGTGCGAGACTTGCCGCGCCAATCTATTCGTATCTTTAGTTAATAATTCCAACGACGACAGCGTATACTGCCTGCCACACGCTCTTCAATTGATCGTGAGAAAGCGAcaagtattgaaaaattgtaccCTGATGTACGCCTACACCGAGGACGAGTTGGACGATTTGATACACAAACTGGAAGACAGGATCGAAGCCAAATCGAAGAAAGCTAATCAAATGAGGCAATCTAAGTAG
Protein Sequence
MVLGRNDKRKRKEGDLVDLMDPLSESPKRTKVHAQRKFAQGAATVFSPAPTLVKEKEKTKPAVITELITHKRPNTEDFLTFLCFRGTSILPPSLNFFNVGSKKEKSETKVCPAAKSKSSSSNAPPAATIAKQETTSNAQSKPGGKSAVAVKKKVTPAVSQKPLNKYKTASSTVQALKKKYQEQRLAKQRIRNKFKASCVMRTRSATERVVLKTVTKLAPRKFLARNETKKRHGLRSGGFPEKAKKTSAPPTKGRQIASKPKKRLVVKEQTSESSESESATSEDDDAAPSKNAPPLKRSTKAIQKKICTRSKSEMRRITRSQRDSAPTASAMSRRPSRKTKEAAAVYMEILGRKLVSPDIENDDNLSVDSFPELPNARRTAQAENEIRAKSKQTAKSRDVKGKESKSAENSSSCKAKPKVEKPILKSSKRTLRVRRYCELDSEDESETSIEPDKTRHVTRRSATKVEKPATRSLRSSSRNQSSKSELPSPTRVLKEKEKIATTKRARPPQKRTESEESEEEESLGTLLSKLKKKKEEKTEVRKAADQNESPPIENPVEPSPLRPARSNNPTPSQVSDDEESFRGFTKKAISKVLSSCNTHVNANLLASEEAYGKLDVLKTQDTPEVDASVQRDAKHATDTKVEPLTSVAPIFTLVKPVQEQSTVATCTPEIGTPSLDEATKLDTRCNHAENNSATKLIEMPLTVMHGRTGRVYMTTEQIEQWLKDSSDAKAKQKKLLASPKKYPSGIPDNVPKTDMNHLSIPTRIQHLVRPVNVTIAKLAEKANARDRMGFQSRIASTCITGARIPLAKPLNIPIPNRNKINADIKEIIKGRTAKVTKEASTGEESEDFGKSDQNSVDGSPDKKSTPEKKGIFQQRKTFLSKVKERKTATPSANAFSPENESSVYAFESDTEVPINTPFRRKLKELGQKGGGGGGTSEPDTSRTGNDDSSKFSDVGTGSETDGKTSSPGKFAIPKSFGNLSNVQVLPLGKMPAEWGGANCSASIAVQVNFDEQSQELPQQQQREDNSLTQESEDPQQKCTEISTQTENTNDNEDDNDGGHVFYIPLQTVTRNGPNLVQGQQLIQGVAVKLGTEGPNGPNQRVLLRAQLVTKPPAAVARCPPVGTVQPTTRTPPSSSSSTSVLDHPYATVNPPVASTSELPAPIVPSAQSTPDFQPPQPQPPSRASSNHSTRQSSSGSNVPEKATKSPKATRERKASVDSTKTGKRASAKSRAKAAEVLSPSNTTAFPCSTNSNAEARLVEAPTFHPTEKDFQDPLEYIDKIRPIAEKFGICRVVPPANFKPECKVSDDMRFTAYNQYVHRMLHRWGPNVKEMMAIKKYLATQSITLTHPPWIGGMEVDLPHLYQTVQSLGGLKEVIEKKKWQKVADGMKIPKSAQDRVTKLDDIYCKYLLPYDTLSPEERGKLFDDVEAEWKIRETKTLQRLDDQSNDADEEDDDDSSDEIEECIVKGRNMPLNAFYRIARNTQRMWFGENQRSGSEAEGASAGEVETAFWKHVAERKRHVCVHAASIDSSGRGFGFSVAKNSPFARHPWNLKVLTNNAGSVLRALGPLMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDEHNNNFREALSKMVPRYCKKKTIWLPSDTAMVPPEMLVNNGVPLCQTVQEPGQFIVVFPKAFTSSICTGYVVSESVYFAQPAWLENAEQVFKDLHDSCEPSIFSFERLLFSIINDTRSHIDVLKQIMPAVLKIRERELEYRKQLECIGLANKEKLPLPDTGKGKKGKKVKEEDGDFECETCRANLFVSLVNNSNDDSVYCLPHALQLIVRKRQVLKNCTLMYAYTEDELDDLIHKLEDRIEAKSKKANQMRQSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01207132;
90% Identity
iTF_00397060;
80% Identity
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