Ipod006608.1
Basic Information
- Insect
- Iphiclides podalirius
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_933534255.1
- Location
- OW152819.1:15411741-15424996[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.2e-76 1.3e-71 241.6 21.9 1 256 130 373 130 404 0.91 2 2 1 2.1e+04 -7.6 18.2 1 48 405 451 405 479 0.70
Sequence Information
- Coding Sequence
- ATGGGCAGTAGATCGGATCTGACGCCCGACAGCAGTGACGAGGAGAGCGGGGAGGCGTTCACCGACGGTGACTTCGACGACTCCGACGAGGGGGCCGTCGTAGAGCGCGCCGACAGCGTAAAGACGGCACATGTGCCAGTCAACGAGACCTTGAACCGGGGTGCCGGCGCCACTATCGATAGAGCAGACGAAGAAAGCAGTGACGATCCACATCATGCTAAAGACGTTGATGCCGTTACTGGCACTGAAGCGTTAGAAATGGCAAACGGCTCTCGAGCTAACGACACGGACGCTTATGTGGAGCGAGACGTCGCGGACGCTAGAACAGACTCGCAGGACGAGATCGGCCCGTCGATAGTCGGGATTCTCGGCGACCAGCACACCCATGCAGAGCAGCGACTGGCGGCGCGGCGGGCTGCCCGCGCGGAGGCGCGCGAGATCCGAATGCGAGAGCTGGAGCGGCAACAGCGCGAGCAGGAGGACCATGCGGACAAGGCGTTCGACATGTACACAGAGACGGTGGGACGCCGTGGGGGTCGGCTAGCCGCTCTCAGTCCGTCCATTCACTCGCCTCGGCGCAGCTCCGAGGACTCCGCCGATGACGTCTTCAGCATTAAGGACCTGAGGCACGAGCTGAAAGAGGTTGAGGAGAAGTTCCGGAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAAGCGGCGCTCGGCTACCAGCTGGAGCTGCTCAAAGACAGGATAGAGGAGTTGCAGGAGGAGTATGCGCAGTTGCAGCGCGAGCACAGGGAGAAGTGCTCGGCCCACGAGCGTCTGAGGCGGGAGCACGCGTCGCTGGAGAGGGAGGTGGCCGCCGCGCGGGACGCGGTGAGGGCGCGCGACGCGGCCGCCGCCGAGGCGGGCTACGCCTACGTGGAGGCGCAGACGGCGGAGGGGGGCTTCGGCTCCGTGCCCCCCCTCGCGCTCGTCTCGCACCACTCGGAGCGGCTGCTGAACGACGCCGGCGAGGGCACGTTAGACGTGCGGCTGCAGCGGCTGGTGAGCTCGAAACAGGCGCTCGAGTCGGAGGTGCGCAAGCTGAAGCTCTGCCTCAACGAGGAGCGCGCGGCGCGGCAGAACGGCGTCGGGCCCCACCACGATCGGGACCACGACGGCGAGCTGGAGGCGCTGCGCAAGTCTGTGGCGGAGGCGAAGGGGCGGGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGCAGGCGGCGGCCGTGGCGCGCCTCGAGGCGCAGGTGGCCCGGCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCCGGCTGCAGCGAGAGGCGAGGGAGGCCCTGAACCGAGTTGAGGAGTTGGAGACGGAGAACAGTCATCTAACGAAGCGTCTGGACAAACTGAAGAACGCCAAGTCCGCCCTGCTGAAGGAGCTGTGA
- Protein Sequence
- MGSRSDLTPDSSDEESGEAFTDGDFDDSDEGAVVERADSVKTAHVPVNETLNRGAGATIDRADEESSDDPHHAKDVDAVTGTEALEMANGSRANDTDAYVERDVADARTDSQDEIGPSIVGILGDQHTHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAFDMYTETVGRRGGRLAALSPSIHSPRRSSEDSADDVFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHREKCSAHERLRREHASLEREVAAARDAVRARDAAAAEAGYAYVEAQTAEGGFGSVPPLALVSHHSERLLNDAGEGTLDVRLQRLVSSKQALESEVRKLKLCLNEERAARQNGVGPHHDRDHDGELEALRKSVAEAKGRAARAEAEAALQAAAVARLEAQVARLRARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -