Ipod000957.1
Basic Information
- Insect
- Iphiclides podalirius
- Gene Symbol
- ttk
- Assembly
- GCA_933534255.1
- Location
- OW152813.1:15678945-15685350[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.9 1.1e+04 -3.5 0.0 19 27 215 223 215 225 0.80 2 2 2.3e-16 3.6e-13 49.3 0.0 1 42 328 370 328 373 0.94
Sequence Information
- Coding Sequence
- ATGTCGCAACAGTACAGCCTCCGGTGGAATAACCACCAACCCAACTTCATTTCTATGTTTACTACACTTCTAAATACACAGACCCTTGTTGATGTGACCCTAGCTGCAGAAGGCAAGCATTTGCAAGCACATAAGGTTGTGTTATCTGCATGTAGTACATATTTTCAGGCACTATTTGTGGACAACCCTTCTAGACATCCAATTGTTATTCTTAAGGATGTCTCATTCTCAGATTTACGCACCATGGTAGATTTTATGTACTATGGTGAAGTAAATGTTACTGAAGAACAACTACCACAGGTACTTGATACAGCCAAACTGCTGAAAATAAAAGGATTAACTGAGATGCCAGATTCAACATCTCTTACGCGGTCACAGGGGACTTCTGCAGATTTTCAATCCCCAGGAGACTCCATAGACTCACAGAGGCATTCTGCATCACCTGCAGCTTCACCATCAAATAAGCGTAGAAGACGTCGAAAAAGTTCCACTGGTTCAACATCTCTAAACATGATGCCCGAAGATAACAGAAATGAAGATCCTGGACAGTCTGTAGATTTAGTTCGAGGAGATTCCATCACACTGAGCAGCTTGCCACAGCAAAGAAGGATGAGGGAGTATCAGGATGATAGAATGGAAAATACACAACAGGCTGCCGATCAACACAACCTCAATGTGGAGCCTCTATCAATGGAAAACAACCCTACAGGAATTCCACAAGGAGGCCAATGGAGTATGATGGAGCACACATACCCCCGTTACTCGAACGCATGCATCGGCGGTGGCGGTCTTCAACCGGATCACGGCATGTACATCAACAACGTTATGAACCCGCACATGGATTCGGATATGAACGATTACGGACAGGGCCTGGGCGTGACCGGCCCTTCGCCCGGGCCCAGCTGCATCGCGGAAGCACAAACCGCCCAGGAGGTTATGCCGCAGACGCAGCCGAAACGACGTCGCACCACGAACCCACAGTCCGAAGAGAACTTCCAGCGCGCCCTGGAAGCGGTCCGCTTCGGCGGCATCGGCTTCTGCAAGGCGGCCCGCATGTTCGGCGTGAACAACAGAACCCTGTGGCTCGAGTACAAAAAGAAGGGGTATCCCAACAACCGGCCCAGTATCAAGAGCAGGATAAAGCGCGAGCACACAACCCCGCCGCCGGAGCCGAAGGAGGAGGTGCCGCAGCAGGACCAGCAGATGGCGCTCCTATGCCCCCCGCACCCAGTGCCGGTGGGTTTCATAGACTCGCGGCCGATCGACTTCCCGCTGCAGGGCGTGCCGCACAACTCTCCCTTGAACATCCTCGGGGTGAACTTTAACTCGATGCAATAG
- Protein Sequence
- MSQQYSLRWNNHQPNFISMFTTLLNTQTLVDVTLAAEGKHLQAHKVVLSACSTYFQALFVDNPSRHPIVILKDVSFSDLRTMVDFMYYGEVNVTEEQLPQVLDTAKLLKIKGLTEMPDSTSLTRSQGTSADFQSPGDSIDSQRHSASPAASPSNKRRRRRKSSTGSTSLNMMPEDNRNEDPGQSVDLVRGDSITLSSLPQQRRMREYQDDRMENTQQAADQHNLNVEPLSMENNPTGIPQGGQWSMMEHTYPRYSNACIGGGGLQPDHGMYINNVMNPHMDSDMNDYGQGLGVTGPSPGPSCIAEAQTAQEVMPQTQPKRRRTTNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHTTPPPEPKEEVPQQDQQMALLCPPHPVPVGFIDSRPIDFPLQGVPHNSPLNILGVNFNSMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00364840;
- 90% Identity
- iTF_01159530;
- 80% Identity
- iTF_00840382;