Ilum003393.1
Basic Information
- Insect
- Ignelater luminosus
- Gene Symbol
- -
- Assembly
- GCA_011009095.1
- Location
- Ilumi1.2:52737-56309[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.34 3.1e+03 -1.0 0.1 10 19 77 86 72 115 0.63 2 7 0.0033 30 5.4 0.0 21 44 119 142 113 146 0.89 3 7 0.00031 2.9 8.7 0.2 21 44 147 170 142 175 0.89 4 7 3.2e-06 0.03 15.1 0.0 21 46 175 200 173 208 0.92 5 7 0.11 1e+03 0.5 0.1 26 46 208 228 202 234 0.86 6 7 0.00016 1.5 9.6 0.9 23 47 233 257 228 264 0.89 7 7 1.4 1.3e+04 -3.0 0.2 12 15 316 319 302 335 0.61
Sequence Information
- Coding Sequence
- ATGTCTGACTACGAGGGTATGGTCAGAGAATTTGTAGACAATGAATTTACGGTTAATAGTGGTGAACCGTTGGACAATATAGTCGGTAGTATTTCGTTGGAGAATTTGTCTTCATTTTTCGAAAGTGAAGAAATTGAGGTAGAATCGTACGAATTAGATATGGAGAATCTTTTGAATCAATCTATTACCAGCAATAACGAAGCATCTTCTGAAAATCAAAGTAATGCTCCAAACATTGAGAAACCTAGAAGAGGAAGAAAACCAGACTTAAAAAAAGGCACCTACAAATGCAGCATCTGTGACAAGAAATTTCAACTTGCGTCCCATTTACAGGTTCATGAAAGAGTACATACAAAAGAAAAGCCATATAAATGTTTTATCTGCGATAAGCTGTTTGCACAACGGAGCAATTTATGGAAGCATGCTAGAACCCATACGGGAGAACGTCCTCATGAATGTAAGATATGTAATCGGAAATTTGCACAAAAGTCAAACTTGCATAAACATTTGTTAGTTCACACTGGTGAAAAACCTTATGTGTGTAATGATTGTGGTGCATCATTTTCGCAATCAAGTAATCTTCGAAAACATCTACAAATACATAAAGGCATTAACAGTTATGTATGTGGATACTGTAATAAAAGCTTTAATCAAAAGGTGAACCTGCAATGCCATCTGAACACACATGAAGGAGTTAGGCCCTATTCTTGTACAATTTGTGCTGTTGCATTTAGACAGAAGTGTCATCTAGAAAGACATGTAGCACTTCATACTGGTGACAAATCATATGTTTGTGAAAATAACTGTGGTAAATCATTTATACAGAAGGCAAGTCTGGAATCTCATAAAAAAGGATGCAATATAAGATATTCAAAGCTTAATACTGAAGAATCAATACAAAAAACAGAACAACCAAATCAAATAACAGAACAACCAAAACAAACAACAGAACAACCAAAACAAGCAACAGAACAAAAACTAACTCTTCCAGAAATACTTCAAGTTGTTGATGCAGAAGGTAATGTAATAGCGACTTTTCCACTAACAGTTGTGACTCCTCATGTTGTTCAAGTACAAGGTGTAGGAATAAATAATTCCACCAACAGTGCCTAA
- Protein Sequence
- MSDYEGMVREFVDNEFTVNSGEPLDNIVGSISLENLSSFFESEEIEVESYELDMENLLNQSITSNNEASSENQSNAPNIEKPRRGRKPDLKKGTYKCSICDKKFQLASHLQVHERVHTKEKPYKCFICDKLFAQRSNLWKHARTHTGERPHECKICNRKFAQKSNLHKHLLVHTGEKPYVCNDCGASFSQSSNLRKHLQIHKGINSYVCGYCNKSFNQKVNLQCHLNTHEGVRPYSCTICAVAFRQKCHLERHVALHTGDKSYVCENNCGKSFIQKASLESHKKGCNIRYSKLNTEESIQKTEQPNQITEQPKQTTEQPKQATEQKLTLPEILQVVDAEGNVIATFPLTVVTPHVVQVQGVGINNSTNSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00838868;
- 90% Identity
- iTF_00838868;
- 80% Identity
- iTF_00838868;