Istr022781.1
Basic Information
- Insect
- Idaea straminata
- Gene Symbol
- zfh1
- Assembly
- GCA_951213275.1
- Location
- OX577871.1:9089424-9093192[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.13 11 7.4 2.5 1 23 264 287 264 287 0.97 2 17 0.016 1.3 10.2 5.8 1 23 292 315 292 315 0.97 3 17 0.00031 0.026 15.6 0.1 3 23 349 370 348 370 0.97 4 17 1.9 1.6e+02 3.7 1.5 2 23 437 459 436 459 0.90 5 17 5.7e-05 0.0046 18.0 1.8 1 23 465 488 465 488 0.95 6 17 2.9 2.4e+02 3.1 2.3 1 14 491 504 491 508 0.84 7 17 0.094 7.7 7.8 0.1 1 23 521 544 521 544 0.89 8 17 0.0046 0.37 12.0 0.2 1 23 549 572 549 572 0.95 9 17 0.0079 0.64 11.2 0.4 2 23 585 606 584 606 0.96 10 17 0.00062 0.05 14.7 1.0 1 23 612 634 612 634 0.97 11 17 1.5 1.2e+02 4.1 0.1 2 9 640 647 639 652 0.89 12 17 0.00034 0.028 15.5 6.1 1 23 670 692 670 692 0.97 13 17 0.068 5.6 8.3 0.9 2 23 697 718 696 718 0.96 14 17 0.0052 0.43 11.8 2.0 1 23 745 768 745 768 0.96 15 17 0.00089 0.073 14.2 3.8 1 23 774 796 774 796 0.98 16 17 0.0011 0.09 13.9 6.1 2 23 803 824 802 824 0.96 17 17 0.014 1.1 10.4 2.8 1 23 830 853 830 853 0.96
Sequence Information
- Coding Sequence
- ATGTCAACCCAACACAACCTAAAACGCTACAAAAACATTCAATTCCTGAACGCACATTTGAAGACATTACTCCTTTCACCAAAGTTCTGTTCCCTATGCCTGGAGAACGATGGAGAGTTCTACCCATTGAGTAAGGAGTTGGCAATCAATGATGGTGGTGGCTCTAGGCCCTTGAGAGATATAGTGGATACTATCTTCAATTTTCATATTGAAGATATAATGCCAAGTGGACTCATATGCGAAAAATGcacagaaaaaataatacattgctATACCTTTATAGAAAACACTAAGAAGTTGTTCAAAGTCATTGAATTTTGTGTCACTGACATAAACTCTAAGGTTTTGGACATAAGTCACGAATTAGATGATAATAGAGAATATTCTGAAGCAAATGTTATGATCGTTGTAGAATATGATGCACAAACATATAATGAAATTGATCAATTAACATCAGTTCAGAATGCTGTATTTTCTGATGTACCGTTAATATCAAAGATTACGGTAGAACACTTAGGACCGATAATTGCTAATGTCAAATCTGATGTTACTGAAATGGATAAAATGAAAGTTGAGAAAGACACTCAAAAGGCTGTTGTAATACCCACTCCAAGAGTAGTGAAACATCCTAGGATATTCAGTAATcaaattattgttaaaaaagaaaacgttAAAGAAGGAAAAGTTATCACTGATAGGGTTAAGCCAAATGTGTTACTAAAAGATGGTAAACTTCTAATAAAACCTTTACTTCTAAACAGTGCTCCGACAATACCAAAATTCAATACATATAATTGTTCTACATGTTCTGACATATTTACTAGTTACAGAAAGTTAAAAGAACATGAAAAAACCAAACACAGTCCGGTTATTTATAAATGCAGACTTTGTGAAAAGTGTTACAATACACAACAATATCTAGATATGCATTATAAATCGAAACATTTAAAAGAAAGATGCAGATTTTGCTCTGAACTTTTTGATACCGATGATGGATCGTTAGATGCACACTTGAGTGAGAACCATAAAAAAGCAGTTTCAGCATGTCCGTTCTGCAATCTAGTATATTACAATTCAGATGAATTAGAAACGCATATAAAATCATCGCATATATGTAATGAAAATctcattacaaataataataaaacgcaATGTATTATGTGTTTGAGAAGTTTTGTATATGATCAGTTAGATCATCATAAGTGCAAATTTGCTTGTCTAGATTGTCCGGTAGTTCAAGATAAATGCATACATTATGACTACCTTATGTCTTATAGAGAACAAGTTCTGAATCATGCATCTACGattaaatgtatagattgtgATTATACAACGAAAAGGAAAGAACTTTTGCTCTGTCATGTAAATAGAGAACATTTAGACCATCATCCGTTTACGTGCAGCGATTGTGGCACTCAATTCTATACGAAACAAAgcctaaaaatacatataacacAATTCCACCAGGAATATAAATGCGAATTCTGTGAtacagattttaataaaaacccgAAATTCTATCGGAGTCACCGGGATAGTTGCAAATTGGTGGCGAGGCAATACGCGTGCGTCCAATGCGTCGCTTCCTTTGATACTAAAGAAGAATTAGATAGACATTCCGAACTGAATCACAGCGAATTCGTATACCCTTGCCCTCTGTGTAAAAAAGAATTTCCCGATGAAATATCTTTGGGTGAACATCACAGTAAAGTCCACAGCAGTGTCCAATTGAAAAAACGAAGAAAGTTAATTGAATGCACACTTTGTGATATAAACTTTAGAAACTTGAAAGAAATGTTTGAACATGAAAAATCTCACAATTCATCCGAGACATTCCCGTGTAAAGTTTGTCCGAAAATCTTTAAAACTCTAAAACAAGTATATATACATAAACAGCGGCACTATTCAGAAAGGACCCAATGCCCTGGCTGTGGGAAATCAATCATAGTCTCCCGTTTCAAACATCATGAGGAAAACTGTCAATTTTTAAAGAATAGTGATTTAAAGCATATTTGCGAGCATTGCGGTAAGGAGTTTCACTCGAATCAGACTTTGAGATTGCACCTAAGGAGCCATGTTAAACCTATATCCTGCGACTATTGCAATAAAATGGTTAAACCTGATTGTCTAGGAGCACATATTAGAAAGAAACATAGAGCTGTCGACAAATTTAACCATCCAATAGACaccaaaaaaacaatacaaaaaaacgaAACGAAACTAAAAGAATTCCACAACTGCGACAAATGTGAATATTCAACGAAATCTCGCCTCTCTTTAGAGAACCACATAAATCGAgtccatttaaaaataaaaccatttagtTGCGAACATTGTGATAAATCATTTTGCGGGAAAATTAGACTGTTGGAACATTTGAAAATCCATTCCGAAAATAACGTATGTTTTTGTTCGTATTGCGGTAAGAAATACGCTAACAAAGTATGCTTGAAAATGCATGTGAGACGTCACACGGGGGAATACCCATACCAATGCAACATTTGTTTCGAAAAATTCCGTTCCTCTAGCATTATGAAGACACATAGACTTAAGAAACACCAAGATAAGACTATTGGTTGTCCACTGTGTGGTAACTTGTTCCATTTGGCGACAGAAATGAGGTTTCATGTTAAAAAGGCGCACTGGACTAGAAATGAACCTTTTGACTATAAACAAATAGTGCCGGTGGAATATCACCATTTGTTTGAAGATCGTAGACTTCAGAAGTTGGGTGAAGACGATGGGATAGCGTTGTAA
- Protein Sequence
- MSTQHNLKRYKNIQFLNAHLKTLLLSPKFCSLCLENDGEFYPLSKELAINDGGGSRPLRDIVDTIFNFHIEDIMPSGLICEKCTEKIIHCYTFIENTKKLFKVIEFCVTDINSKVLDISHELDDNREYSEANVMIVVEYDAQTYNEIDQLTSVQNAVFSDVPLISKITVEHLGPIIANVKSDVTEMDKMKVEKDTQKAVVIPTPRVVKHPRIFSNQIIVKKENVKEGKVITDRVKPNVLLKDGKLLIKPLLLNSAPTIPKFNTYNCSTCSDIFTSYRKLKEHEKTKHSPVIYKCRLCEKCYNTQQYLDMHYKSKHLKERCRFCSELFDTDDGSLDAHLSENHKKAVSACPFCNLVYYNSDELETHIKSSHICNENLITNNNKTQCIMCLRSFVYDQLDHHKCKFACLDCPVVQDKCIHYDYLMSYREQVLNHASTIKCIDCDYTTKRKELLLCHVNREHLDHHPFTCSDCGTQFYTKQSLKIHITQFHQEYKCEFCDTDFNKNPKFYRSHRDSCKLVARQYACVQCVASFDTKEELDRHSELNHSEFVYPCPLCKKEFPDEISLGEHHSKVHSSVQLKKRRKLIECTLCDINFRNLKEMFEHEKSHNSSETFPCKVCPKIFKTLKQVYIHKQRHYSERTQCPGCGKSIIVSRFKHHEENCQFLKNSDLKHICEHCGKEFHSNQTLRLHLRSHVKPISCDYCNKMVKPDCLGAHIRKKHRAVDKFNHPIDTKKTIQKNETKLKEFHNCDKCEYSTKSRLSLENHINRVHLKIKPFSCEHCDKSFCGKIRLLEHLKIHSENNVCFCSYCGKKYANKVCLKMHVRRHTGEYPYQCNICFEKFRSSSIMKTHRLKKHQDKTIGCPLCGNLFHLATEMRFHVKKAHWTRNEPFDYKQIVPVEYHHLFEDRRLQKLGEDDGIAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00835059;
- 90% Identity
- iTF_00835059;
- 80% Identity
- -