Basic Information

Insect: Idaea straminata
Gene Symbol: -
Assembly: GCA_951213275.1
Location: OX577856.1:12910874-12914523[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0018 0.15 13.2 0.2 1 23 23 45 23 45 0.96

2 17 0.0013 0.11 13.7 0.1 1 23 73 96 73 96 0.95

3 17 8e-05 0.0066 17.5 0.0 1 23 124 146 124 146 0.97

4 17 0.18 15 6.9 0.5 5 23 153 172 150 172 0.94

5 17 0.00055 0.045 14.8 5.0 1 23 248 270 248 270 0.98

6 17 0.00079 0.065 14.4 0.5 2 23 276 297 276 297 0.95

7 17 7.5e-06 0.00062 20.7 0.3 1 23 303 326 303 326 0.94

8 17 0.00011 0.009 17.0 1.4 1 19 332 350 332 354 0.93

9 17 1e-05 0.00085 20.3 0.4 1 23 360 384 360 384 0.96

10 17 0.062 5.1 8.4 0.7 1 23 390 413 390 413 0.90

11 17 8.1e-07 6.7e-05 23.8 0.5 1 23 418 441 418 441 0.95

12 17 8e-06 0.00066 20.6 3.9 1 23 449 471 449 472 0.96

13 17 0.028 2.3 9.5 0.5 2 23 481 503 480 503 0.96

14 17 2.7e-05 0.0022 19.0 0.7 1 23 509 532 509 532 0.98

15 17 0.028 2.3 9.5 2.5 1 23 539 562 539 562 0.93

16 17 0.0072 0.59 11.3 2.0 2 21 566 585 565 586 0.93

17 17 0.24 19 6.6 2.6 2 23 587 609 584 609 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0018	0.15	13.2	0.2	1	23	23	45	23	45	0.96
2	17	0.0013	0.11	13.7	0.1	1	23	73	96	73	96	0.95
3	17	8e-05	0.0066	17.5	0.0	1	23	124	146	124	146	0.97
4	17	0.18	15	6.9	0.5	5	23	153	172	150	172	0.94
5	17	0.00055	0.045	14.8	5.0	1	23	248	270	248	270	0.98
6	17	0.00079	0.065	14.4	0.5	2	23	276	297	276	297	0.95
7	17	7.5e-06	0.00062	20.7	0.3	1	23	303	326	303	326	0.94
8	17	0.00011	0.009	17.0	1.4	1	19	332	350	332	354	0.93
9	17	1e-05	0.00085	20.3	0.4	1	23	360	384	360	384	0.96
10	17	0.062	5.1	8.4	0.7	1	23	390	413	390	413	0.90
11	17	8.1e-07	6.7e-05	23.8	0.5	1	23	418	441	418	441	0.95
12	17	8e-06	0.00066	20.6	3.9	1	23	449	471	449	472	0.96
13	17	0.028	2.3	9.5	0.5	2	23	481	503	480	503	0.96
14	17	2.7e-05	0.0022	19.0	0.7	1	23	509	532	509	532	0.98
15	17	0.028	2.3	9.5	2.5	1	23	539	562	539	562	0.93
16	17	0.0072	0.59	11.3	2.0	2	21	566	585	565	586	0.93
17	17	0.24	19	6.6	2.6	2	23	587	609	584	609	0.94

Sequence Information

Coding Sequence: ATGTGTACCTTATCTTTATTACAGCAATCTGGCATCCCCATAGTAAAGTTGGAGAGACTAAAACTGTTCAGCTGCGGAGAATGTGACAAAGTGTACCATACTGAGGATGGACTGGCCGACCATGGCAAGTGGCATGATCTGCAGGAGTATCTAAACCGGGCTGGGGTGTTGAATCATTTTGAAAGTGCATTTGTAAAGTTAACACGAGTGAATATATTCCAATGTGGGGTTTGTCCTGTAGCATTTGTTAACCTTCGTCAATTTCAAGATCATCAGGCCAATGCACACAAGAAGCAGAAAACGAAGCAAAGCTCTCAAAACAATACAGCCGATGTTGATGACAGTAAcaataatgaaattaataagCCTTACAAGTGTGGGGACTGTGGATGGCGGTTCGTTGCGGAGTCAACTCTCCTCGCTCACCAAGCACTCCACGAACCCATGCACACTTGCGTCTGTGGCATCGGCTACTACCGAGAACGAGACCTCATCTCCCATCGCAGGCTCATACACCCCACTAAACTTACATGGAAACAGGAAACCAAATACAAAGGACCTAAGTTTTTACCAGAATTTGCTATCAAACCTGAACCTGAATCAGATACCGATTCAAAAGAATCAATGAAACCTCGTTTAAAAGCTAGActcattacaaagaaaaaagctAAATATAAGCTGAAGATAAAGATAGAAAAGGAAAGGAATACGATAAATAAGGACAATATAAGTGGACCACCATACCAGTGTAAAATATGCCATAAAttctttaataaatttaatacatATAAGGCACATCAAATAATACATACAGATAAAGCTCCCAAGTGCTCTGATTGTGGAAAGTTATTCCTAAATAAGTCGAATCTAGAAATACATAAGGTTGTTCACACTGGTGAGAGACCACATCCATGCGAAATATGTAACAAAAGTTTTACTCAAACCGCTGCACTCAATGTCCATCTCAAAGCAGTCCATATAAATTCAAAAGAATATGAATGTAAAATATGTAAGAAGAGATTCAACCTCAAAACTCAATTGCAACGTCATGACCTGATACATAGAGCTTTGAAACCATACATTTGTACGTTTAAGTTATGTGAGAAAGGGTTTTCTGATCCGTCGGCTTTGGCACGCCATAAACGGACGCATACGGGCGAGTGCCGGTACTTCTGCCCGCACTGTCCCGCCGCGTTCACGGACATTAGCGCGCACGGGGCCCATATCAATCGGAAACACCTAAACAAACGATACTTGTGCAAAATTTGCGGGAAAACATTAGCACACCCAGCAAACCTTACTACACATATGCGAATACAGCATGGAATAGGCGAAGATAAACTTTTCGAATGCGACTATTGTGGTAAAAGATTCAACGTAAAAAATTATTTAGTCCATCACATTAAAATCCATCATGATAAACCCAAAGAGAGACTCTGGGAATGTGATTTTTGCCCGAAGATGTTCTTGCACCAATATAGCAGAGGTGCCCACATGAGAATTGTACACTTCAAGAAGAATGCCTACGAGTGCGACtattgtaatataatatttatatataaaacaacATTGATAAATCACATAAAGAAAAACCATATCGGAACACCGATGAAATACCAGTGTGATTACTGTCACCGCAGATTACCTAAGAAAAGAAGTATATTGAAACACATAGCTTTCCAACATCTGAACATTAAATGTTATAAGTGTAAACAGATGTTTTATACACCGATCGAGCTTAGGAAACACAAGTGCTCCCAGTGTTTAGAGTGTAATGGATTGTTTGGGACGAAGAGGAAACTGACGGCTCATAAGAAAAGGTTGCATTCcgataaaattgtaattttcaatgCTGTAGAAAATACTCCATCAGTAGTATCCTAG
Protein Sequence: MCTLSLLQQSGIPIVKLERLKLFSCGECDKVYHTEDGLADHGKWHDLQEYLNRAGVLNHFESAFVKLTRVNIFQCGVCPVAFVNLRQFQDHQANAHKKQKTKQSSQNNTADVDDSNNNEINKPYKCGDCGWRFVAESTLLAHQALHEPMHTCVCGIGYYRERDLISHRRLIHPTKLTWKQETKYKGPKFLPEFAIKPEPESDTDSKESMKPRLKARLITKKKAKYKLKIKIEKERNTINKDNISGPPYQCKICHKFFNKFNTYKAHQIIHTDKAPKCSDCGKLFLNKSNLEIHKVVHTGERPHPCEICNKSFTQTAALNVHLKAVHINSKEYECKICKKRFNLKTQLQRHDLIHRALKPYICTFKLCEKGFSDPSALARHKRTHTGECRYFCPHCPAAFTDISAHGAHINRKHLNKRYLCKICGKTLAHPANLTTHMRIQHGIGEDKLFECDYCGKRFNVKNYLVHHIKIHHDKPKERLWECDFCPKMFLHQYSRGAHMRIVHFKKNAYECDYCNIIFIYKTTLINHIKKNHIGTPMKYQCDYCHRRLPKKRSILKHIAFQHLNIKCYKCKQMFYTPIELRKHKCSQCLECNGLFGTKRKLTAHKKRLHSDKIVIFNAVENTPSVVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00834855;
90% Identity: -
80% Identity: -