Basic Information

Insect: Idaea straminata
Gene Symbol: Bcl11b
Assembly: GCA_951213275.1
Location: OX577856.1:4792561-4815203[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 8.9e-05 0.0073 17.3 1.5 1 23 425 447 425 447 0.96

2 20 0.0037 0.31 12.2 0.8 1 20 453 472 453 475 0.93

3 20 0.00021 0.017 16.2 5.8 1 23 494 516 494 516 0.98

4 20 4.4e-05 0.0036 18.3 5.1 1 23 522 544 522 544 0.99

5 20 3.8e-05 0.0031 18.5 5.3 1 23 550 572 550 572 0.97

6 20 2.7e-07 2.2e-05 25.3 5.3 1 23 578 600 578 600 0.98

7 20 5.2e-07 4.3e-05 24.4 3.0 1 23 606 628 606 628 0.98

8 20 0.00011 0.0086 17.1 6.7 1 23 634 656 634 656 0.97

9 20 0.0001 0.0085 17.1 6.5 1 23 662 684 662 684 0.97

10 20 5e-07 4.1e-05 24.4 1.9 1 23 690 712 690 712 0.98

11 20 1e-05 0.00081 20.3 7.7 1 23 718 740 718 740 0.98

12 20 2.6e-05 0.0021 19.0 6.6 1 23 746 768 746 768 0.98

13 20 1.8e-05 0.0015 19.5 6.0 1 23 774 796 774 796 0.98

14 20 6.2e-06 0.00051 21.0 5.7 1 23 802 824 802 824 0.96

15 20 1.1e-06 8.9e-05 23.4 5.3 1 23 830 852 830 852 0.98

16 20 2.4e-06 0.0002 22.3 3.8 2 23 859 880 858 880 0.98

17 20 2e-05 0.0017 19.4 7.5 1 23 886 908 886 908 0.97

18 20 1.6e-05 0.0013 19.7 6.7 1 23 914 936 914 936 0.98

19 20 0.0002 0.016 16.2 0.5 1 23 943 965 943 965 0.97

20 20 0.028 2.3 9.5 5.4 1 23 976 998 976 998 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	8.9e-05	0.0073	17.3	1.5	1	23	425	447	425	447	0.96
2	20	0.0037	0.31	12.2	0.8	1	20	453	472	453	475	0.93
3	20	0.00021	0.017	16.2	5.8	1	23	494	516	494	516	0.98
4	20	4.4e-05	0.0036	18.3	5.1	1	23	522	544	522	544	0.99
5	20	3.8e-05	0.0031	18.5	5.3	1	23	550	572	550	572	0.97
6	20	2.7e-07	2.2e-05	25.3	5.3	1	23	578	600	578	600	0.98
7	20	5.2e-07	4.3e-05	24.4	3.0	1	23	606	628	606	628	0.98
8	20	0.00011	0.0086	17.1	6.7	1	23	634	656	634	656	0.97
9	20	0.0001	0.0085	17.1	6.5	1	23	662	684	662	684	0.97
10	20	5e-07	4.1e-05	24.4	1.9	1	23	690	712	690	712	0.98
11	20	1e-05	0.00081	20.3	7.7	1	23	718	740	718	740	0.98
12	20	2.6e-05	0.0021	19.0	6.6	1	23	746	768	746	768	0.98
13	20	1.8e-05	0.0015	19.5	6.0	1	23	774	796	774	796	0.98
14	20	6.2e-06	0.00051	21.0	5.7	1	23	802	824	802	824	0.96
15	20	1.1e-06	8.9e-05	23.4	5.3	1	23	830	852	830	852	0.98
16	20	2.4e-06	0.0002	22.3	3.8	2	23	859	880	858	880	0.98
17	20	2e-05	0.0017	19.4	7.5	1	23	886	908	886	908	0.97
18	20	1.6e-05	0.0013	19.7	6.7	1	23	914	936	914	936	0.98
19	20	0.0002	0.016	16.2	0.5	1	23	943	965	943	965	0.97
20	20	0.028	2.3	9.5	5.4	1	23	976	998	976	998	0.99

Sequence Information

Coding Sequence: ATGAATCCTGATCACCACAACCTTAATACGGGCGGAGGCCAGCCCCCTGGGAATTCGGAGTCGCAGAATCAGAGAGTTCAGGCGGCGCAGCAGCAACAGCAGCAAGGGGCCATGCCTGCTACCACCTCTGCGACCGATCTACGAGTCAATTCGGCTGCAGTAAACGTTGCTTTGTCCAGCGTTGCTAAGTATTGGGTGTTTACGAATTTGTTCCCTGGACCGATACCTCAAGTGTCCGTTTATGGACTGCCAACTGGAACTAGAATTGAAAATGGGAAACCTGTCCAGGATCTAGGCCAAGCGCATGCAAGTTTACTGAATGGTGATCCCAACATTATACTAGGACATCATGGCGGGCAACCCCAAGTCACTGTCTCAACAGCTGGAGCCCAACAGCTACCCGTTTCACAGATTATAGCCACGCAGTCTGCTGGGCAGACTCATGAAGCACTGGTGGCGCACAGTCAGCAGCAAGAGTTGAACCAGCAGGCATCAGCCTCGGGACAGGTTTCGGTCACCTCTGGCCCTTCCGCTCACCACCAGGTACCCAATAACCGGGTCGAATTTGTACAACACCATAACATTGATATGggTCATCATTCACAACAGCACATTATGCAGCAGCAGTTAATGGCTACCACACGACAGGAGCATCCTAATCAACAGATACAACTGACTGTCAGCGAAGATGGAATCGTGACAGTTGTGGAACCGAGCAGCAGTAAGATGGTGGAGAAGGAGGAACTTCACGAGACCATCAAGCTGCCAGCTGACCATACACTGACTGTACATCAGTTACAACAAATTGTTGGACAACAGGTGTTAGACAGTGTTGTCCGTATTGAACAAGCGACAGGTGAACCCGCCAATATCCTGGTCACTCACAATCCGGACGGCACCACTTCTATAGAAGCCAGCGCTCAAGACCCCCTAGCCATTGTGAAGGATGAAAAAAGTGCGGGAAAAATTGAAACAGCACAGTTTGCTATACCTGCTGAAATTAAAGATATAAAGGGCATTGATTTGAAGAGCGTTGGAGCGATGGGTATGGAAGGCGCGGTGGTAAAGATCTCTACTGGCGCGTCGGAACATGATCTCTCACACGCGATGTACAAGGTCAATGTGGAAGATCTGTCGCAGTTGTTGGCTTACCACGAGGTTTTCGGGAAGCTTAACACTGATGGACAGCCTGCTGCTAAGAATGAAGTGGAAATCGACGTGCCCGGCACTAGTGCAGCCGCCTTGTCCGAGGCTGAGTCATCACCCGGACACCACGCCTGCGATATATGCGGGAAGATATTCCAGTTTAGATACCAGTTGATTGTTCACAGACGTTACCACAGCGAGAACAAGCTATTCATGTGTCAAGTCTGTGGTTCGTCGTTTGCTAATCCAGTGGAGCTATCGCGACATGGAAAGTGTCATCTTGCCGGTGATCCCGCTGAGAGACACGCCAAGAGATTGGCTCAGGACAAACCCTACGCGTGCACAACTTGCCATAAAACGTTCCTGCGTAAGGAACATCTCAATAACCACATCCGCAGCCATTCTGGCGAGACGCCTTACAGATGCGAGTTCTGTTCTAAAACGTTTACACGCAAAGAACACATGGTGAACCACGTTCGCAAACACACTGGTGACACGCCGCATCGCTGCGACATTTGCAAGAAAAGCTTCACAAGGAAAGAACATTTCATGAACCATGTCATGTGGCATACAGGTGAAACGCCGCATCAATGTCAAATATGCGGCAAGAAGTTCACTAGGAAAGAGCATTTAGTGAGCCATATGAGGTCTCACACTAATGATACTCCGTTCCGATGCGAACTTTGCGGCAAGTCCTTTACAAGGAAGGAACACTTCACCAATCACATTATGTGGCATACCGGAGAAACCCCGCACAGATGCGACTTTTGCTCCAAAACGTTCACTCGTAAAGAGCACTTGTTGAACCACGTCCGTCAGCACACGGGCGAGTCGCCTCATCGCTGCAACTTTTGTTCGAAGTCGTTCACGAGACGGGAACATTTGGTCAACCATGTGCGGCAACATACCGGCGAAACGCCCTTCCAGTGCGGATACTGTCCGAAAGCGTTTACTAGAAAGGATCATTTAGTGAATCACGTCCGCCAACACACAGGCGAGTCGCCGCACAAGTGTTCGTATTGCACGAAGTCGTTCACTCGCAAGGAACACCTTACGAACCACGTGCGCCAACACACGGGCGAGTCGCCGCATCGATGCACATACTGCGCCAAATCGTTCACGAGGAAAGAACATCTTACGAATCATGTCAGACAGCATACCGGTGAAACGCCACACAAGTGCACGTTCTGCCCGCGCGCGTTCACGCGCAAGGAGCACCTCAACAACCACCTGCGTCAACACACCGGCGTCACGCCGCACGCCTGCTCCTACTGCAACAAGACATTTACAAGGAAAGAACATCTCGTCAACCATGTGCGGAAACACACGGGCGAGACTCCATTCAAGTGCACTTACTGTACGAAGTCGTTTTCGCGCAAGGAGCACCTAAACAATCACGTTAACATGCACACGGGGGAAACGCCGAATAAATGTCCGTTCTGCACAAAGACATTCTCTAGAAAGGAACATCTTACCAACCACGTCAGAATTCACACCGGTGAATCGCCGCATCGCTGCGCATTCTGCAACAAGACGTTCACTCGCAAGGAACACCTCACTAACCACATGAAACAGCACACCGGCGACGCGGCGCACACTTGCAAGATATGCTCCAAACAGTTCACTAGGAAAGAGCATTTGGTTACTCATATGAGATACCACAGCTGCAGCGACCGCCCATACAGTTGTAGCGAGTGCGGTAAATCTTTCCCCTTGAAGGGTAACCTGATGTTCCACGAGCGATCACACAACAAGACCAATAACGCAGGCTCTAGACCTTTCAGATGTGATGTCTGCTCTAAAGAATTTATGTGCAAAGCTCATCTCGTAACTCACAGAAGGACTCACGAGGATTCCGGCGAGACTGCAGCTACAGAAGCTCGGCCTGAAGCCGAAGAACAAAATTGTACTAGCAAATGTGTTAAAGTTGAACAGGATAACATATCTGTTAAACGAGAACATGAAGTCAAGCCAGCAGCTGTAACTGAAACTCGTGCTGCTGAAAACACGGTAGTACCCCAAGCGTCGCCGAACACCTCTTCAGTCATGCAGATTAATAACCAATATGACGAGAAACATCGCGGCGCAACATCAGCTTCGCCCGATGTCACAGCATTCACGCACGCCGCGCCGCAACACCACCCTGGTACTGCGATAGCGCACCATCCAGTTACGGTCAACTATTAG
Protein Sequence: MNPDHHNLNTGGGQPPGNSESQNQRVQAAQQQQQQGAMPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDLGQAHASLLNGDPNIILGHHGGQPQVTVSTAGAQQLPVSQIIATQSAGQTHEALVAHSQQQELNQQASASGQVSVTSGPSAHHQVPNNRVEFVQHHNIDMGHHSQQHIMQQQLMATTRQEHPNQQIQLTVSEDGIVTVVEPSSSKMVEKEELHETIKLPADHTLTVHQLQQIVGQQVLDSVVRIEQATGEPANILVTHNPDGTTSIEASAQDPLAIVKDEKSAGKIETAQFAIPAEIKDIKGIDLKSVGAMGMEGAVVKISTGASEHDLSHAMYKVNVEDLSQLLAYHEVFGKLNTDGQPAAKNEVEIDVPGTSAAALSEAESSPGHHACDICGKIFQFRYQLIVHRRYHSENKLFMCQVCGSSFANPVELSRHGKCHLAGDPAERHAKRLAQDKPYACTTCHKTFLRKEHLNNHIRSHSGETPYRCEFCSKTFTRKEHMVNHVRKHTGDTPHRCDICKKSFTRKEHFMNHVMWHTGETPHQCQICGKKFTRKEHLVSHMRSHTNDTPFRCELCGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCTFCPRAFTRKEHLNNHLRQHTGVTPHACSYCNKTFTRKEHLVNHVRKHTGETPFKCTYCTKSFSRKEHLNNHVNMHTGETPNKCPFCTKTFSRKEHLTNHVRIHTGESPHRCAFCNKTFTRKEHLTNHMKQHTGDAAHTCKICSKQFTRKEHLVTHMRYHSCSDRPYSCSECGKSFPLKGNLMFHERSHNKTNNAGSRPFRCDVCSKEFMCKAHLVTHRRTHEDSGETAATEARPEAEEQNCTSKCVKVEQDNISVKREHEVKPAAVTETRAAENTVVPQASPNTSSVMQINNQYDEKHRGATSASPDVTAFTHAAPQHHPGTAIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01030446;
90% Identity: iTF_00836782;
80% Identity: -