Basic Information

Insect: Idaea dimidiata
Gene Symbol: Bcl11b
Assembly: GCA_949358125.1
Location: OX442340.1:11491642-11519017[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 9.6e-05 0.0078 17.3 1.5 1 23 426 448 426 448 0.96

2 20 0.004 0.33 12.2 0.8 1 20 454 473 454 476 0.93

3 20 0.00023 0.018 16.2 5.8 1 23 495 517 495 517 0.98

4 20 4.7e-05 0.0038 18.3 5.1 1 23 523 545 523 545 0.99

5 20 4.1e-05 0.0033 18.5 5.3 1 23 551 573 551 573 0.97

6 20 2.9e-07 2.3e-05 25.3 5.3 1 23 579 601 579 601 0.98

7 20 5.6e-07 4.6e-05 24.4 3.0 1 23 607 629 607 629 0.98

8 20 0.00011 0.0092 17.1 6.7 1 23 635 657 635 657 0.97

9 20 0.00011 0.0091 17.1 6.5 1 23 663 685 663 685 0.97

10 20 5.4e-07 4.4e-05 24.4 1.9 1 23 691 713 691 713 0.98

11 20 1.1e-05 0.00087 20.3 7.7 1 23 719 741 719 741 0.98

12 20 2.8e-05 0.0023 19.0 6.6 1 23 747 769 747 769 0.98

13 20 1.9e-05 0.0015 19.5 6.0 1 23 775 797 775 797 0.98

14 20 6.7e-06 0.00054 21.0 5.7 1 23 803 825 803 825 0.96

15 20 2.5e-06 0.0002 22.3 5.0 1 23 831 853 831 853 0.98

16 20 2.6e-06 0.00021 22.3 3.8 2 23 860 881 859 881 0.98

17 20 2.2e-05 0.0018 19.4 7.5 1 23 887 909 887 909 0.97

18 20 1.7e-05 0.0014 19.7 6.7 1 23 915 937 915 937 0.98

19 20 0.00037 0.03 15.5 0.3 1 23 944 966 944 966 0.97

20 20 0.03 2.4 9.5 4.4 2 23 976 997 975 997 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	9.6e-05	0.0078	17.3	1.5	1	23	426	448	426	448	0.96
2	20	0.004	0.33	12.2	0.8	1	20	454	473	454	476	0.93
3	20	0.00023	0.018	16.2	5.8	1	23	495	517	495	517	0.98
4	20	4.7e-05	0.0038	18.3	5.1	1	23	523	545	523	545	0.99
5	20	4.1e-05	0.0033	18.5	5.3	1	23	551	573	551	573	0.97
6	20	2.9e-07	2.3e-05	25.3	5.3	1	23	579	601	579	601	0.98
7	20	5.6e-07	4.6e-05	24.4	3.0	1	23	607	629	607	629	0.98
8	20	0.00011	0.0092	17.1	6.7	1	23	635	657	635	657	0.97
9	20	0.00011	0.0091	17.1	6.5	1	23	663	685	663	685	0.97
10	20	5.4e-07	4.4e-05	24.4	1.9	1	23	691	713	691	713	0.98
11	20	1.1e-05	0.00087	20.3	7.7	1	23	719	741	719	741	0.98
12	20	2.8e-05	0.0023	19.0	6.6	1	23	747	769	747	769	0.98
13	20	1.9e-05	0.0015	19.5	6.0	1	23	775	797	775	797	0.98
14	20	6.7e-06	0.00054	21.0	5.7	1	23	803	825	803	825	0.96
15	20	2.5e-06	0.0002	22.3	5.0	1	23	831	853	831	853	0.98
16	20	2.6e-06	0.00021	22.3	3.8	2	23	860	881	859	881	0.98
17	20	2.2e-05	0.0018	19.4	7.5	1	23	887	909	887	909	0.97
18	20	1.7e-05	0.0014	19.7	6.7	1	23	915	937	915	937	0.98
19	20	0.00037	0.03	15.5	0.3	1	23	944	966	944	966	0.97
20	20	0.03	2.4	9.5	4.4	2	23	976	997	975	997	0.98

Sequence Information

Coding Sequence: ATGAATCCTGACCACCACAACATAAACACGGGCGGAGGCCAGCCCCCTGGGAGTTCAGAGTCACAGAATCCGAGAGTTCAGGCGGTGCAACAGCAAGGAGCCCTGCCTGCTACCAGCTCGGCAACCGACCTACGAGTCAATTCGGCTGCAGTAAACGTTGCTTTGTCCAGCGTTGCTAAGTATTGGGTGTTTACCAATTTGTTTCCCGGACCAATCCCACAAGTGTCCGTCTATGGATTACCAAGTGGAACTAGAATTGAAAATGGAAAACCCGTTCAGGATCTAGGCCAAGCGCATGCAAGTATACTGAATGGTGACCCTAATATTATCTTGGGACATCATGGAGGGCAACCCCAGGTCACCGTCTCAACAGCGGGAGCCCAACAGATACCCGTATCACAGATTATCGCTACACAGTCTGCTGGACAGGCTCATGAAGCACTGGTGGCGCACAGTCAACAGCAAGAGTTAAACCAGCAGGTGTCGGCCTCTGCACAGGTTTCGGTCACATCTGGCCCTCCCTCCCACCACCAGGTACCCAATAATCGGGTCGAATTTGTACAACACCATAACATTGATATGGGCCATCATTCACAACAGCATATAATGCAGCAGCAGCTGATGGCTGCTACTAGACAGGACCACCCCAATCAGCAGATTCAACTGACCGTAAGCGAGGATGGGATCGTGACGGTGGTGGAGCCGAGCAGCAGCAAGATGGTGGAGAAGGAGGAGCTTCACGAGACCATCAAGTTACCGACTGACCACACCACGCTGACTGTGCACCAGCTGCAGCAGATCGTGGGACAACAGgtGATCGATAGCGTAGTTCGCATAGAACAAGCTACAGGCGAACCCGCAAATATCTTGGTCACTCACAATCCGGACGGTACAACGTCTATCGAAGCCAGCGCCCAAGATCCTCTAGCTATCGTCAAGGATGAAAAAAGTGCAGGAAAAATCGAGACAGCGCAGTTTGCTATACCTGCCGAAATCAAAGATCTCAAGGGCATTGACTTGAAGAGCGTGGGCAGTATGGGCATGGAAGGTGCGGTAGTGAAGATATCGACGGGCGCGTCCGAGCACGACCTCACACACGCGATGTACAAGGTCAATGTGGAGGACCTGTCGCAGCTGCTCGCCTACCACGAGGTCTTCGGGAAGCTCAACGCTGATGGACAACCCGCTGCTAAGAACGAAGTAGAGATCGATGTGCCGGGCACTAGCGCGAGCAGCGCGGCCGCCATGTCCGAGGCGGAGTCCTCGCCCGGACACCACGCCTGCGACATCTGCGGGAAGATATTCCAGTTCAGATACCAGCTCATTGTTCACAGACGTTACCACAGCGAGAACAAACTATTCATGTGTCAAGTCTGTGGGTCTTCATTTGCTAATCCAGTGGAGTTATCGCGCCATGGAAAATGTCATCTTGCGGGCGACCCCGCCGAGCGCCACGCGAAGCGCCTGGCGCAGGACAAGCCGTACGCGTGCACCACCTGCCACAAGACCTTCCTGCGTAAGGAACATCTCAACAACCACATCCGCAGCCATTCCGGGGAGACACCTTAcagATGCGAGTTTTGTTCTAAAACGTTTACACGTAAAGAGCACATGGTGAACCACGTCCGCAAGCACACCGGCGACACTCCGCATCGCTGCGACATCTGCAAGAAGAGCTTCACCAGGAAAGAACATTTCATGAACCACGTCATGTGGCATACAGGTGAGACTCCGCATCAATGTCAAATATGCGGGAAGAAGTTCACTAGGAAAGAGCACTTAGTGAGTCATATGAGGTCTCACACTAACGATACTCCGTTCCGATGCGAACTTTGCGGGAAGTCCTTTACGAGGAAGGAACACTTCACCAATCACATAATGTGGCATACCGGAGAAACCCCGCATAGATGCGACTTTTGCTCCAAGACGTTCACTCGCAAGGAGCACTTGTTGAACCATGTCCGCCAACACACGGGCGAGTCGCCTCACCGCTGCAACTTCTGCTCGAAGTCGTTCACCCGACGCGAACACTTGGTCAACCATGTGCGGCAACACACGGGCGAAACGCCCTTCCAGTGCGGATATTGTCCGAAAGCGTTTACTAGGAAGGATCATTTAGTGAACCACGTCCGCCAACACACGGGCGAGTCGCCCCACAAGTGCTCATACTGCACCAAATCGTTCACTCGCAAGGAGCACCTCACGAACCACGTGCGACAACACACGGGCGAGTCGCCGCATCGGTGCACCTACTGCGCCAAGTCATTCACTAGGAAAGAGCACCTTACGAACCATGTCAGACAGCACACGGGAGAAACGCCCCACAAGTGCACGTTCTGCCCGCGCGCGTTCACCCGCAAGGAGCACCTCAACAACCACCTGCGGCAACACACCGGCGTCACGCCGCACGCCTGCTCCTACTGCAACAAGACCTTCACGAGGAAGGAGCATCTCGTCAACCATGTCAGGAAACACACGGGCGAGACTCCGTTCAAGTGTACTTACTGTACGAAGTCGTTTTCGCGCAAGGAGCACTTAAACAATCATGTAAACTTGCACACGGGAGAAACGCCGAATAAGTGCCCGTTCTGCACTAAGACATTCTCTAGAAAGGAACATCTTACGAACCACGTCAGGATCCACACCGGCGAGTCGCCGCACCGCTGCGCGTTCTGCAACAAGACGTTCACCCGCAAGGAGCACCTCACCAACCACATGAAGCAACACACCGGCGACGCCGCGCACACCTGCAAGATATGCTCCAAGCAGTTCACTAGGAAAGAGCATCTGGTCACTCATATGAGATACCACAGTTGCAGCGACCGGCCGTACAGTTGCGGCGAATGCGGTAAATCGTTCCCCTTGAAGGGTAACCTGATGTTCCATGAACGATCACACAACAAGTCTAACGCCAACAGACCGATCAAATGCGAAGTCTGTTCTAAAGAATTCATGTGCAAAGCTCATCTCATAACTCATCGGAGGACTCACGAAGATTCCGGAGATAACGCATCGTCGGAGGCGCGCCCTGAAGCCGAAGAAGAAAACTGTACCAGCAAATGTGTTAAAGTCGAACAGGAGAACAACATATCTGTAAAGCGAGAACACGATGCGCAGCCGGCAGTCGTCACCGAAACTCGTGCAGCTGAAAACACTGTCGTCGGCCAAGCGTCGCCGAATGCCCCTACAGTCATGCAGATAAATGCCCAATACGATGAAAAACACCTCGGGGCGGCAGCAGGCTCGCCCGAAGTGGCAACATTCACGCACACGACGCCACAACACCACGCGGGAACCGCGATATCGCATCACCCGGTCACCGTCAACTATTAG
Protein Sequence: MNPDHHNINTGGGQPPGSSESQNPRVQAVQQQGALPATSSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPSGTRIENGKPVQDLGQAHASILNGDPNIILGHHGGQPQVTVSTAGAQQIPVSQIIATQSAGQAHEALVAHSQQQELNQQVSASAQVSVTSGPPSHHQVPNNRVEFVQHHNIDMGHHSQQHIMQQQLMAATRQDHPNQQIQLTVSEDGIVTVVEPSSSKMVEKEELHETIKLPTDHTTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAQDPLAIVKDEKSAGKIETAQFAIPAEIKDLKGIDLKSVGSMGMEGAVVKISTGASEHDLTHAMYKVNVEDLSQLLAYHEVFGKLNADGQPAAKNEVEIDVPGTSASSAAAMSEAESSPGHHACDICGKIFQFRYQLIVHRRYHSENKLFMCQVCGSSFANPVELSRHGKCHLAGDPAERHAKRLAQDKPYACTTCHKTFLRKEHLNNHIRSHSGETPYRCEFCSKTFTRKEHMVNHVRKHTGDTPHRCDICKKSFTRKEHFMNHVMWHTGETPHQCQICGKKFTRKEHLVSHMRSHTNDTPFRCELCGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCTFCPRAFTRKEHLNNHLRQHTGVTPHACSYCNKTFTRKEHLVNHVRKHTGETPFKCTYCTKSFSRKEHLNNHVNLHTGETPNKCPFCTKTFSRKEHLTNHVRIHTGESPHRCAFCNKTFTRKEHLTNHMKQHTGDAAHTCKICSKQFTRKEHLVTHMRYHSCSDRPYSCGECGKSFPLKGNLMFHERSHNKSNANRPIKCEVCSKEFMCKAHLITHRRTHEDSGDNASSEARPEAEEENCTSKCVKVEQENNISVKREHDAQPAVVTETRAAENTVVGQASPNAPTVMQINAQYDEKHLGAAAGSPEVATFTHTTPQHHAGTAISHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01030446;
90% Identity: iTF_00835810; iTF_00837771; iTF_00834850;
80% Identity: -